Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03472 ATGACATGGTGCAATGACTCAAATGATCAAGATAGAGGCATTGAAGTAATCACATCCACCATTATTCCTAGAACAAACAATGAAACTACTCTTGTTCCTCATGATGCCACAAAACAACACCAAATTCCAACCTTAACTTGCCCCTCATGTGGGCATAACTTTGAAACCAACGATAAGGGTGGAAAAAGTGAATTGCTGGGGTTACCAGCTGGAATGAAATTTGATCCAAATGATCAAGAGATACTACAACACTTGGAAGCAAAAGTTGTGTTTGATGTGACCAAACTTCATCCTCTCATTGATGAGTTCATACCAACGCTTGATGGAGAGGATGGAATCTGTTGTACACATCCAGAAAAGTTACCAGGTGTAAGAAAAGATGGACAGATCAAACACTTCTTTCACAGGCCATCTAAAGCATACACAACTGGAACAAGAAAAAGAAGAAAGGTTCATACTGGTGTAGATGGAAGTGAAACAAGATGGCACAAAACAGGGAAAACAAGACCAGTTTTCATTGGTGGTGTTGTGAAAGGTTTCAAAAAGATTCTAGTCCTCTACACTAACTATGGAAGGCAAAGGAAACCAGAGAAGACTAATTGGGTGATGCATCAATACCATCTTGGTAGTACTGAAGAAGAAAAAGATGGTGAATTAGTTGTTTCAAAAGTTTTCTACCAAACACAACCTAGACAATGTGGTGGTAATAATAATGGAATTATAATAAGGGAAAATTATGATGAAAATAGATTGATGAATGCTGAAGGAAATGTCCAAGATGATGATAATGAAGCTCCTCCTCCTCCTCCTCCTCCTCCTATGGATTACTACAATTCTCATTTCATAAATTATGAACATGTTGTTGGTCATAATTTGGAAAGCTCATCAATGTCTCAATTTATTCCAAACATGGTTATGCAAGGTGATAACTCTTCCTTTATTGGATTAGCAATGGATGCAAACAAAGCAAGGTTGGACAGAAATTAG 987 0.3749 MTWCNDSNDQDRGIEVITSTIIPRTNNETTLVPHDATKQHQIPTLTCPSCGHNFETNDKGGKSELLGLPAGMKFDPNDQEILQHLEAKVVFDVTKLHPLIDEFIPTLDGEDGICCTHPEKLPGVRKDGQIKHFFHRPSKAYTTGTRKRRKVHTGVDGSETRWHKTGKTRPVFIGGVVKGFKKILVLYTNYGRQRKPEKTNWVMHQYHLGSTEEEKDGELVVSKVFYQTQPRQCGGNNNGIIIRENYDENRLMNAEGNVQDDDNEAPPPPPPPPMDYYNSHFINYEHVVGHNLESSSMSQFIPNMVMQGDNSSFIGLAMDANKARLDRN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03472 328 SUPERFAMILY NAC domain 65 227 IPR036093 GO:0003677|GO:0006355
Trre8g03472 328 Pfam No apical meristem (NAM) protein 69 208 IPR003441 GO:0003677|GO:0006355
Trre8g03472 328 FunFam NAC domain-containing protein 73 77 231 - -
Trre8g03472 328 ProSiteProfiles NAC domain profile. 68 227 IPR003441 GO:0003677|GO:0006355
Trre8g03472 328 Gene3D NAC domain 77 231 IPR036093 GO:0003677|GO:0006355
Trre8g03472 328 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 22 244 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03472 Trre-Chr8 38499956 38503414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03472 1 236 NAC Transcription Factor Family AT4G28500 68.354 3.80e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g03472 NAM 3.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03472 - - tpra:123916172 561.222