Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03471 ATGGAACAGCAACAAGTTCTTCCCTCTCTCGCACTTCAAATCCTCGCCGGTCCTCGAAAAGGCGAAACCCTCAATTTCCGACCCGAATCCATAATCAAAATCGGCCGGGTCATCCGCGGCAACACTCTCCCCATCAAAGATCCAGGTATATCCACCAAACATCTCTCTATTCAATTCGAATCCGGTAATTGGATACTCACAGATCTAGATTCCTCAAACGGTACCGTTTTAGACAACAACCGCATTCCTCCCAACACTCCTTTTCATCTCCGTGATGGATCCACCATTAAGATCGGTGAAGTCACTTCCATCGTCGTTAACTTTGTTTATCCCCAAAATAACCCTACATCTACTGAAGTTGAAGATAAACCAATGATGGGTAGAAGAGGTAATAATAATAAGGGTTTGAAAGTTAGGGTTCCTGTTCAGAGTATTGATGAAAACGCAATTTTAAATGATGGTGATGATTCTGAGCATGTGGATCGACCTGAGCCAGCGCCGGTTACACGTAATACGAGGAGTACGCGGAGTGGAGTTGTTGTTTCTGATTCTGCTGATGGGAATTTGGATGCTTTTGAAGAGAAGGTGGAAGAGCCGAAGAATGTGAGGGTCACGCGGAATTCGAAGAATAAGAAGAATGCGGTTGAGATTTGTGGTTCGAGTATTGGGAATTTGGAAGCTCTGGAAGAGAAGGTGGAGGAACTGAAGAATGTGAGGGTGACAAGGAATTTGAAGAATAAGCTGAACAAAATGGGGATTTCTGAATCAAGTATTGGGGATTTGGATGCTGTGAAAGAGAAGGCGGAGGAGGGACCGAGGAATGGAAGGGTGACGAGGAACACGAAGAATAAAGGGGTTGTAATTGAGGAAAATTCGAGCTTGATGGATGGGGTGGAGAATGTTGTGAAAAAGAAAACAAGGGGTGGTGCCAAGGGTAAGAAGAAGGTACAGGAAGAGTGTGTTGGTGATGGAGATGATAAAGAGAATTGTGATGATGGGAGAGAAAAGGAGAATTTGAATGGGGATGAGAATTGGCCTGATTTGGGGAAAATGACTTTAGGTGACTGGTTTGATTTCTTGGAAGTTTATTTGCCTAAACAGATAAATGATGAAACTGAAGCCATTATTGATTCCATGAGACAAAAAGCCGAGAGACTCCGCGAGTACGTCAAAATGTATCAGAATCAAAAAGCTTGA 1197 0.4353 MEQQQVLPSLALQILAGPRKGETLNFRPESIIKIGRVIRGNTLPIKDPGISTKHLSIQFESGNWILTDLDSSNGTVLDNNRIPPNTPFHLRDGSTIKIGEVTSIVVNFVYPQNNPTSTEVEDKPMMGRRGNNNKGLKVRVPVQSIDENAILNDGDDSEHVDRPEPAPVTRNTRSTRSGVVVSDSADGNLDAFEEKVEEPKNVRVTRNSKNKKNAVEICGSSIGNLEALEEKVEELKNVRVTRNLKNKLNKMGISESSIGDLDAVKEKAEEGPRNGRVTRNTKNKGVVIEENSSLMDGVENVVKKKTRGGAKGKKKVQEECVGDGDDKENCDDGREKENLNGDENWPDLGKMTLGDWFDFLEVYLPKQINDETEAIIDSMRQKAERLREYVKMYQNQKA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03471 398 ProSiteProfiles Forkhead-associated (FHA) domain profile. 32 82 IPR000253 GO:0005515
Trre8g03471 398 MobiDBLite consensus disorder prediction 152 166 - -
Trre8g03471 398 MobiDBLite consensus disorder prediction 321 340 - -
Trre8g03471 398 MobiDBLite consensus disorder prediction 168 182 - -
Trre8g03471 398 SUPERFAMILY SMAD/FHA domain 5 110 IPR008984 GO:0005515
Trre8g03471 398 Coils Coil 369 396 - -
Trre8g03471 398 Coils Coil 218 245 - -
Trre8g03471 398 Pfam FHA domain 32 99 IPR000253 GO:0005515
Trre8g03471 398 MobiDBLite consensus disorder prediction 151 183 - -
Trre8g03471 398 Gene3D - 2 113 - -
Trre8g03471 398 PANTHER NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 8 307 - -
Trre8g03471 398 SMART FHA_2 31 82 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03471 Trre-Chr8 38446599 38447795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03471 10 130 PP2C-type Phosphatase Gene Family AT5G19280 31.884 9.65e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03471 - - cam:101493113 478.404