Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03450 ATGGGTTCTGAGAATGGGTGCAGAGCAAGTGAGCTCTTTCAAGCTCAAGCTCACTTGTACAATCACATTCTTAGCTTCTTGAAACCAATGTCCATCAAGTGGCCGGCAAAAGCCGTTTGTGTTCAAAGTCTAATGCGTTTATTGGCACACAATAACTTCTTTACAATTGTTGAAATGGAAGGGAAAGAAGCATATGCTCTTGCCCCACCATCAGAGCTGCTTGTCAAAGGCACTGACCATTGTTTAACTTCAATGGTTCAGCTAATAACAAATCCAAATCTTGTTGATTTGTACAATCATTTAAGTAAATGGACTTCCGGGGACGAGCTCACAATCTTTGAGACTGCATCAGGCCCAGGAGATTATTGGGGTTTTATTCATCAAAATCCCACACATTTGAAGTCCTTCAATGAGGCTATGGAAAGTGATTCTCATGTGATGAGATTGGCACTGAGTGATTGCAAGCCTGTTTTTGAAGGCTTGGGTTCTCTGGTTGATGTTGGAGGTGGAACTGGAAACACAGCTAAAATCATCTGTGAGATATTTCCTGTGTTAAAATGCACAGTGTTGGATCTTCCGCAGGTGGTGGCAGGCTTACCAGGAACTGAAAAATTGAGTTTTGTTGGCGGAAACATGTTCAAATCTATCCCTCAAGTTGATGCAATCTTACTTAAGTGGATTTTGCATGACTGGAATGACGATGACTGTGTAAAGATACTCCAAAATTGTAAAGAAGCAGTTTTAAGAAAAGGCAAAGGAGGAAAAGTGGTTATAATAGATATTGTGATAAATGAAAAGCAAGATAAGCATGAAATGACAGAAGTCAAGCTTTTCTTTGACATAATTATGATGGCTAGTTTTAATGGAAGAGAAAGAGATGAAAATAACTGGAAACAAATTTTCACAAAAGCAGGGTTCACACACTACAAAATATTTCCCATATTCGGTTTTAGATCACTTATCGAGCTTTGTGTTTAG 978 0.3896 MGSENGCRASELFQAQAHLYNHILSFLKPMSIKWPAKAVCVQSLMRLLAHNNFFTIVEMEGKEAYALAPPSELLVKGTDHCLTSMVQLITNPNLVDLYNHLSKWTSGDELTIFETASGPGDYWGFIHQNPTHLKSFNEAMESDSHVMRLALSDCKPVFEGLGSLVDVGGGTGNTAKIICEIFPVLKCTVLDLPQVVAGLPGTEKLSFVGGNMFKSIPQVDAILLKWILHDWNDDDCVKILQNCKEAVLRKGKGGKVVIIDIVINEKQDKHEMTEVKLFFDIIMMASFNGRERDENNWKQIFTKAGFTHYKIFPIFGFRSLIELCV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03450 325 Gene3D - 34 74 IPR036388 -
Trre8g03450 325 FunFam O-methyltransferase ZRP4 76 325 - -
Trre8g03450 325 PIRSF O-mtase 2 39 IPR016461 GO:0008168
Trre8g03450 325 PIRSF O-mtase 34 325 IPR016461 GO:0008168
Trre8g03450 325 Pfam O-methyltransferase domain 98 306 IPR001077 GO:0008171
Trre8g03450 325 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 325 IPR016461 GO:0008168
Trre8g03450 325 SUPERFAMILY "Winged helix" DNA-binding domain 10 78 IPR036390 -
Trre8g03450 325 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 80 322 IPR029063 -
Trre8g03450 325 PANTHER O-METHYLTRANSFERASE 33 310 IPR016461 GO:0008168
Trre8g03450 325 Gene3D Vaccinia Virus protein VP39 75 324 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03450 Trre-Chr8 38251146 38252473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03450 30 323 Monolignol Biosynthesis Gene Families AT5G54160 33.882 1.51e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03450 K22588 K13262 gmx:100818947 355.14