Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03443 ATGGGAAAAAGAAAGGCAAAAACAAAACCACCTCCAAAGAAAAGAATGGATAAGCTTGACACTGTTTTTAGCTGTCCTTTCTGCAACCATGGCTCTAGTGTCGAGTGCCGCATTGATATGAAGAACTTGATAGGGGAAGCTTCTTGCGGAATATGTCAAGAGAGCTTTAGCACTTCCATCACAGCTTTATCTGAGGCAATAGACATATACAGTGAATGGATTGATGAATGTGAACGAGTGAACACCGTAGAAGATGATGGTGCTTAG 267 0.4157 MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTSITALSEAIDIYSEWIDECERVNTVEDDGA 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03443 88 Gene3D - 16 82 IPR038567 -
Trre8g03443 88 PANTHER UNCHARACTERIZED 1 85 IPR007808 -
Trre8g03443 88 SUPERFAMILY Zinc beta-ribbon 1 81 - -
Trre8g03443 88 FunFam Transcription elongation factor 1 homolog 15 82 - -
Trre8g03443 88 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03443 Trre-Chr8 37973930 37975124 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g03443 Elf1 4.3e-31 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03443 K25829 - qsu:112020125 171.014