Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03420 ATGACTGCTCGTCCGTCTCGCATCATAGTTCAACGTCCATTCAATCCAAAGTTACCACCGGTAATCAACTTGAACTCTCAAGCTTCTCTAGTTGAACCACCGAATACGAATGACTGTGGAAGAGAAGGAATGGAATTCTTTACTGAGAAATTCGTGGATTTTGAAAGTTTGAAACTAAACGGAGTTGATATAAAGGATCTCTTCTATGATCAACAATGGGGCAACTACTTCGACATGCTTAATGGTTTCGTCTACTACGACATAGTCAGAAATTTCTGGAATAAAGCGTATGTTTTTGACACAATAAGGTCTTGGGCTAATGCAGAGTTTAACAAAAGAAAGACACTTCGAAAGTGTGACATTGCATCTGCAATAGCAAATACTGATGTATTTGATTTCCTAATTGATATTGCTCCAAATGAAGACACAATGGAACATGACATATTTAAGGATATACCAAGAAGAGATTATGTTCCAACAAGGAATGTTAATTTTCCAGCTTATTGTTATGTGCCTGGTCCTATGCAATCTCAGCATGTTCCTATGCAAACTCAGTATGCTGCAGGTCCATCCTATGGTCCTCCTCCTCCAGGAATGCTTATGGGACAAGTTCTCCATCAAGCTTATTACCACAACATGCAGCTACCTCATCCTTTTGCAAATCCAATGTTTCCAATTCCAAAACAGGAAAATGATGATTCTACTAATTTGCCTGATTCGGAGAATTAA 729 0.3855 MTARPSRIIVQRPFNPKLPPVINLNSQASLVEPPNTNDCGREGMEFFTEKFVDFESLKLNGVDIKDLFYDQQWGNYFDMLNGFVYYDIVRNFWNKAYVFDTIRSWANAEFNKRKTLRKCDIASAIANTDVFDFLIDIAPNEDTMEHDIFKDIPRRDYVPTRNVNFPAYCYVPGPMQSQHVPMQTQYAAGPSYGPPPPGMLMGQVLHQAYYHNMQLPHPFANPMFPIPKQENDDSTNLPDSEN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03420 242 Gene3D Histone, subunit A 100 140 IPR009072 GO:0046982
Trre8g03420 242 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 101 156 - -
Trre8g03420 242 SUPERFAMILY Histone-fold 103 140 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03420 Trre-Chr8 37152595 37153323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03420 101 203 CCAAT-HAP5 Transcription Factor Family AT1G08970 39.806 3.52e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03420 K08066 - nnu:104612503 87.0409