LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g03403	ATGGATCATTTCGAAAATAACACGTATATATTTATATATATTCTTCCACACACGCTGAATCCGGTAAACCCTAGAAAAGGCTTCTTCCTCCTCTGCCTCCGACGGAAGAAGGTAGAGTTTTCAAAAATGGCTCCTCCTAAAGGTGATAAGAAGGCTGATCCAAAGGCACAGGCCTTGAAAGCTGCCAAGGCAGTCAAGTCAGGCACTGCTATTAAGAAAAAGGCAAAGAAGATCAGAACAACGGTCACTTTCCATCGCCCAAAGACACAAACACAGAACAGGAACCCCAAGTACCCTCGCATTAGTGCCGTCCCAAGGAATAAGCTTGATCACTACCAAATTTTGAAGTTCCCACTCACCACCGAGTCGGCAATGAAGAAAATTGAGGATAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGATAAGAAAAAGATTAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCAAAGAAGGTTAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGCTGACTCCTGACTACGATGCATTGGATGTAGCAAACAAGATTGGGATTATCTAA	585	0.4325	MDHFENNTYIFIYILPHTLNPVNPRKGFFLLCLRRKKVEFSKMAPPKGDKKADPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTQTQNRNPKYPRISAVPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g03403	194	Hamap	50S ribosomal protein L23 [rplW].	114	194	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03403	194	NCBIfam	50S ribosomal protein L23	118	194	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03403	194	Gene3D	-	75	194	IPR012677	-
	Trre8g03403	194	PANTHER	60S RIBOSOMAL PROTEIN L23A	47	194	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03403	194	FunFam	60S ribosomal protein L23a	73	194	-	-
	Trre8g03403	194	Pfam	Ribosomal protein L23, N-terminal domain	55	103	IPR005633	-
	Trre8g03403	194	ProSitePatterns	Ribosomal protein L23 signature.	172	187	IPR001014	GO:0019843
	Trre8g03403	194	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	111	187	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Trre8g03403	194	Pfam	Ribosomal protein L23	114	176	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g03403	Trre-Chr8	36644087	36645763	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g03403	67	194	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	89.062	2.66e-65	196

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g03403	K02893		-	tcc:18590760	239.965