Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03388 ATGGCACATTCTATTGAAAAAGATGTGTTTCCTCAACAATTTTCAACCAATGTTAGGGTTCTTGTGATTGATCATGATATCAATCATCTCAATAATATTGAGAAAATGTGCTCTCAATTCCAATACCCAGTTAAGACATGCTCCAATGTTTCTGAAGCTTTGAATCTTTTGATGGATAAAATGGATTGTTTTGATGTTGTACTACTTGAAGCTCAAATGCCTGATATGAATTCATATGATTTTTTGCAATTTGTTACAGAACAAATCAATATCCCTGTCATTATGATGTGTGTTGGTGAGGCAATAAGTGATGTGAAGAAGGCTATTGTAAACGGGGCTTGTATTTATTGGATCAAACCATTGAGTGAGAATCAAATCAAATACATGTGGAAATATGTTGCACTGAAAATTTGGAATGAAAAAAAAGAAAAAGAAATTGATGAATGTATGAAAAAAAAGGAGAAAGATAAAAGGGATAAAGATAAGCATGAATCATCAATGGAAAAAACACGTCTTGCATGGACACCTGAGTTGCATAAATTATTTGTTAATGCGGTGATGGAACTCAATATTGATAATGCAGTACCCACAACAATTCTTGATAAGATGAATGTGGCTGGATTGACAAGAGAGCAAGTAGCTAGTCATCTACAGAAGTTTAGGCTTTATCTGAAGGAAAAAGAGGCAGAAAGACAACAACAAATACAATTGAATTCTGCATTGTGTCTTAGCTTTTCTCATCCTATGTTACAACAAAATTCAATGATGTATGGATGCAGTTCTTCTCAACAATTTCCCAACAATTTGATAGCGAGAAATTTTCCTCCTCATTTCAATAATTCATTCAACAATTTAAATCAAACTGGTTCAGTTTCTGTCAACCAGCAGAATCGTGGTGGATTTGGTACTCATGCTATTATCAATCCATATTTTCAAGAAACACAAGGTGGAAGCCTTTTCTTAGAGTACATTACTCAACATAGTCCAATGGCTCAGCCATTTCCAATGTCGTCATCGACAATTGGTGCTACAAGACCTTCGGGTGGTCTTTCTCCCATTGGTGTTGCTAATATTGGTTACATTAATGCCAACATAACAAGGGTAAAGGTGAAGGAGCTTGATTCTAGTTTGCAAAAAGATGTAATGAAGCCAAAGGAGGGAACAATTCAAGAAGCAAGTGAATCAGCAAACAAAGTGGAGGGTACAGAGAATGTGCAAGGAATGAATTCTGTTACCAATGTGGAACTTCTTAACACCAACAGTGCGGAAACGAAGGAACTACGTAGGGGAACGAGGTCACGCAAACCGAACATATTGTTGAAGGATTATGTTAGATAG 1338 0.3587 MAHSIEKDVFPQQFSTNVRVLVIDHDINHLNNIEKMCSQFQYPVKTCSNVSEALNLLMDKMDCFDVVLLEAQMPDMNSYDFLQFVTEQINIPVIMMCVGEAISDVKKAIVNGACIYWIKPLSENQIKYMWKYVALKIWNEKKEKEIDECMKKKEKDKRDKDKHESSMEKTRLAWTPELHKLFVNAVMELNIDNAVPTTILDKMNVAGLTREQVASHLQKFRLYLKEKEAERQQQIQLNSALCLSFSHPMLQQNSMMYGCSSSQQFPNNLIARNFPPHFNNSFNNLNQTGSVSVNQQNRGGFGTHAIINPYFQETQGGSLFLEYITQHSPMAQPFPMSSSTIGATRPSGGLSPIGVANIGYINANITRVKVKELDSSLQKDVMKPKEGTIQEASESANKVEGTENVQGMNSVTNVELLNTNSAETKELRRGTRSRKPNILLKDYVR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03388 445 CDD REC_typeB_ARR-like 20 134 - -
Trre8g03388 445 Gene3D - 166 227 - -
Trre8g03388 445 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Trre8g03388 445 SMART REC_2 18 130 IPR001789 GO:0000160
Trre8g03388 445 SUPERFAMILY CheY-like 17 134 IPR011006 -
Trre8g03388 445 Gene3D - 17 161 - -
Trre8g03388 445 NCBIfam myb-like DNA-binding domain, SHAQKYF class 169 222 IPR006447 GO:0003677
Trre8g03388 445 Coils Coil 139 159 - -
Trre8g03388 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 225 IPR017930 -
Trre8g03388 445 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 279 IPR045279 GO:0009736
Trre8g03388 445 FunFam Two-component response regulator 165 228 - -
Trre8g03388 445 SUPERFAMILY Homeodomain-like 167 226 IPR009057 -
Trre8g03388 445 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Trre8g03388 445 Pfam Myb-like DNA-binding domain 172 219 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03388 Trre-Chr8 36439264 36442024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03388 13 270 Response Regulator Gene Family AT2G25180 33.220 1.09e-41 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre8g03388 Response_reg 2.7e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03388 - - tpra:123914711 486.493