Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03350 ATGCTGAGAGTGATTTATAAGTTATTGGGTGTTCTTGTAGCTGCCGGGTTGCAAGTGCTTCAAGAAAAGAACCTCATACATCGAGATTTAAAACCACAAAACTTACTGTTGACAAATATATCAGTTACACCACTTATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTCACACCTCTGCAGTTGGGAGATACACTATGTGGTTCACCTTATTACATGGCACCTGGGATAATTCAGAGTCATATGATGCCAAGGTGA 258 0.3992 MLRVIYKLLGVLVAAGLQVLQEKNLIHRDLKPQNLLLTNISVTPLMKIGDFGFARSLTPLQLGDTLCGSPYYMAPGIIQSHMMPR 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03350 85 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Trre8g03350 85 Pfam Protein kinase domain 13 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03350 85 SUPERFAMILY Protein kinase-like (PK-like) 13 80 IPR011009 -
Trre8g03350 85 Gene3D Transferase(Phosphotransferase) domain 1 4 83 - -
Trre8g03350 85 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 13 80 IPR045269 GO:0004674|GO:0006914
Trre8g03350 85 ProSiteProfiles Protein kinase domain profile. 1 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03350 Trre-Chr8 35275343 35275957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03350 17 84 EF-hand Containing Proteins AT2G31500 41.176 8.51e-14 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Trre8g03350 Pkinase 1.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03350 - K08269 tpra:123884297 123.25