Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03349 ATGTCTGCAGCTCTCGATATGACCCTCGATGATATCATCAAGAACAACAAAAAATCTGGATCCGGAAACCCTAGAGGCCGTTCTAGACCCGGACCCGGATCCGGACCTGGTCCCGCTCGCCGTTTACCTAACCGTGCTGTCAACCGCGCCGCACCTTACTCCGGCACCGCTAAGGCGCCAGAGACTACGTGGCATCATGATTTGTATGGAGATCAACATGTGGCTGCGGCGGCGTTTCCTGCTCAAGGTGGTCGTGCGCCTTCCATAGAAACTGGAACCAAGCTTTATATATCTAATTTGGATTATGGTGTTTCCAATGATGATATAAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACCGGAGTGGCAGATCGAAGGGTACTGCAGAAGTAGTCTTCTCACGGCGACAAGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAACTAGATGGGAAACCAATGAAGATAGAGATTGTTGGAACCAACATTTCTACACCTGGTGCGGCTCCTGTTGTAAATGCAGCTATTGGAAATTTTAATGCAGTTCCTCAAAGTGGGCAAGGAAGAGTTGGAGATTTACGAGGGCCGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGAGGTCGTGGTGGTGGTCGTGGTGGAGGTCGCGGAAGAGGTCGTGACGAAAAGGTATCTGCAGAAGACCTTGATGCTGAGCTGGAGAAGTATCATGCAGAGGCCATGCAATTAAACTAA 789 0.4943 MSAALDMTLDDIIKNNKKSGSGNPRGRSRPGPGSGPGPARRLPNRAVNRAAPYSGTAKAPETTWHHDLYGDQHVAAAAFPAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAAIGNFNAVPQSGQGRVGDLRGPGGRGQGIRRNRGRGRGSGGGRGGGRGGGRGRGRDEKVSAEDLDAELEKYHAEAMQLN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03349 262 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 260 - -
Trre8g03349 262 MobiDBLite consensus disorder prediction 232 247 - -
Trre8g03349 262 Gene3D - 80 246 IPR012677 -
Trre8g03349 262 MobiDBLite consensus disorder prediction 193 247 - -
Trre8g03349 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Trre8g03349 262 SUPERFAMILY RNA-binding domain, RBD 89 232 IPR035979 GO:0003676
Trre8g03349 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 170 IPR000504 GO:0003723
Trre8g03349 262 SMART rrm1_1 94 166 IPR000504 GO:0003723
Trre8g03349 262 MobiDBLite consensus disorder prediction 1 48 - -
Trre8g03349 262 Pfam C-terminal duplication domain of Friend of PRMT1 205 256 IPR025715 -
Trre8g03349 262 CDD RRM_THOC4 93 167 - -
Trre8g03349 262 SMART FoP_duplication_2 192 262 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03349 Trre-Chr8 35210477 35214191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03349 92 221 Eukaryotic Initiation Factors Gene Family AT1G71770 27.517 2.60e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03349 K12881 - gmx:100775827 330.872