Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03348 ATGCGCGTAGCTACCATAGTGAATAGTAAAACTCTTCTATTCCAAAACTCAGCCTTACCACGATTGTTGCTATGCGTGCGCCATCATTCAACAACCAAATTATTCCTTGCAGGGCTTTCCTATAATACGAATGAAACAGTCTTAAGAGACACGTTTAAACAACATGGGCAAATCATTGAAGTTAAAGTAATATGTGACCATAAAACTGGGGAATCAAAAGGGTATGGATTTGTGAGGTTCAATTCTGAAATTGCAGCTACCTCAGCTCGCAAAGAATTGCACGGCCGGATAGTGGATGGTAGACGCATTCGAGTGGCTTATGCGCACAAAGGGTAA 336 0.4167 MRVATIVNSKTLLFQNSALPRLLLCVRHHSTTKLFLAGLSYNTNETVLRDTFKQHGQIIEVKVICDHKTGESKGYGFVRFNSEIAATSARKELHGRIVDGRRIRVAYAHKG 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03348 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Trre8g03348 111 SMART rrm1_1 33 106 IPR000504 GO:0003723
Trre8g03348 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Trre8g03348 111 Gene3D - 15 111 IPR012677 -
Trre8g03348 111 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 16 110 - -
Trre8g03348 111 SUPERFAMILY RNA-binding domain, RBD 27 110 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03348 Trre-Chr8 35117534 35118384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03348 32 110 Eukaryotic Initiation Factors Gene Family AT3G16380 41.772 1.68e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03348 K13195 - gmx:100306540 148.673