Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03323 ATGGAGTCTGATCAATGTGATCAAGGTGGTGGTGGTGGTGATCAAGATGGTTTAAAACAAGTGACTAACCTTAGGTCCTATGAGTGCAATTTTTGCAAGAGAGGTTTCTCTAATGCACAAGCACTTGGAGGACACATGAATATTCATAGGAAAGACAAAGCAAAGCTCAAACAACAATCTTCTAATTTGGAGCAAGGAAATTCTAGTGAAGAGCTCAACAAATTATTACCAAACTTTTTGAATTCTAATATTGTGCTGCCTCAAAAACAAGATCAACAACATGTCCCTTCTAGAAGTGAAGAAATTCTTGTAATTGATCACACAAGACAACAACTTCCACTTTTTTCAGAATCACCAACAAAAAATGAAATGCAAAATCAACAAGGTGGTCAAATTCATCAAAGGGAAATTACTACTACTGCTGCTACTACTACCGCGACTACTACACAAGAGGCTTTGTTGTTATCTAATGATCAAGATTCTTCATTGGAGTTAGACCTTGAATTAAGACTAGGGTCTGAGCCTCATGATTCTTCAAAGCCAACGGGTACAAGAAAATTCTTTTGA 567 0.3686 MESDQCDQGGGGGDQDGLKQVTNLRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNLEQGNSSEELNKLLPNFLNSNIVLPQKQDQQHVPSRSEEILVIDHTRQQLPLFSESPTKNEMQNQQGGQIHQREITTTAATTTATTTQEALLLSNDQDSSLELDLELRLGSEPHDSSKPTGTRKFF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03323 188 PANTHER OS07G0101800 PROTEIN 23 175 - -
Trre8g03323 188 Pfam C2H2-type zinc finger 27 51 - -
Trre8g03323 188 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Trre8g03323 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Trre8g03323 188 Gene3D Classic Zinc Finger 16 78 - -
Trre8g03323 188 SUPERFAMILY beta-beta-alpha zinc fingers 24 54 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03323 Trre-Chr8 32662935 32663501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03323 25 184 C2H2 Transcription Factor Family AT3G53820 32.099 1.34e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g03323 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03323 - - tpra:123918605 285.419