Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03306 ATGGGGGAAGAAGTTCGAACAGATGAAGAACGCGTAACGGAGTGGGAAAAGGGACTACCTAATCTTCACGATCTAACTCCACTTTCCATGGCGCTGATTCCACCGGAGTTAGCTTCCGCTTTCAGCATCTCCCCGGAGCCTCACCGTACACTCGTCGACGTTAACCGTGCCTCCCGCAACACACTCTCAATTCTCCGAAACAGCGGAGGAACAAACCACCACCACCAACAACAACAACACTTCTCGCCAGAACCAGAAGAAGACGAAGAAATCGAAGACGAAACCGATCGAGATGGTTCGGGATCTGATTCACGAAAACATCGGAAAATTGATTCGGTTAATGAGGAAGCAGATTCGGCGGTTAGAACTACTGAAACGACGTTAAAACGGCCGCGATTGGTGTGGACTCCACAGTTACATAAAAGATTCGTTGATGTAGTTGCTCATCTCGGAATCAAAAACGCTGTTCCCAAAACGATTATGCAGTTGATGAACGTTGAAGGATTAACACGTGAGAATGTTGCTTCTCATTTGCAGAAATATCGTCTTTATTTGAAGAGGATGCAAGGTCTTTCAAACGATGCACCTTCTTCTTCTGATCATCTTTTTGCATCTACACCTGTTCCTCATAGTTTGCAATTGCAGCAACATGAATCTGTTTCTGCTAATAATCATTCTCATTCGCAATCCAATGGACATGGAAATGGAAATGGGAATAATTCGCATTCGCATCATCATTCTGTTACTATTCCTATGCCATATCCACCACCACCTCCGACGATGATGTCAATGCCGCCCATGCTTGGTATGGGACATCATCATCACCATCCACATGGTCATATGGGGATGAGTTTGCCTCCTTCTGGTTCTAACTCGTATCGGTCGCATCCGTTTAATATGATGCATCATAGGGACTGGCCTCCGAATCCTCACTCTCATCCTCATATGTCTGCTAATGATAGTAATAAATAA 972 0.4496 MGEEVRTDEERVTEWEKGLPNLHDLTPLSMALIPPELASAFSISPEPHRTLVDVNRASRNTLSILRNSGGTNHHHQQQQHFSPEPEEDEEIEDETDRDGSGSDSRKHRKIDSVNEEADSAVRTTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPHSLQLQQHESVSANNHSHSQSNGHGNGNGNNSHSHHHSVTIPMPYPPPPPTMMSMPPMLGMGHHHHHPHGHMGMSLPPSGSNSYRSHPFNMMHHRDWPPNPHSHPHMSANDSNK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03306 323 MobiDBLite consensus disorder prediction 250 264 - -
Trre8g03306 323 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g03306 323 MobiDBLite consensus disorder prediction 64 124 - -
Trre8g03306 323 Pfam Myb-like DNA-binding domain 134 182 IPR001005 -
Trre8g03306 323 MobiDBLite consensus disorder prediction 98 124 - -
Trre8g03306 323 Gene3D - 126 189 - -
Trre8g03306 323 MobiDBLite consensus disorder prediction 216 323 - -
Trre8g03306 323 MobiDBLite consensus disorder prediction 216 247 - -
Trre8g03306 323 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 9 290 IPR044841 GO:0003700|GO:0006355
Trre8g03306 323 SUPERFAMILY Homeodomain-like 127 187 IPR009057 -
Trre8g03306 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 186 IPR017930 -
Trre8g03306 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Trre8g03306 323 MobiDBLite consensus disorder prediction 1 18 - -
Trre8g03306 323 MobiDBLite consensus disorder prediction 64 78 - -
Trre8g03306 323 FunFam Two-component response regulator 126 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03306 Trre-Chr8 32425283 32426254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03306 1 209 G2-like Transcription Factor Family AT3G46640 58.547 1.15e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g03306 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03306 - - tpra:123918598 486.108