Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03299 ATGATGAATTCAGAAACGCAACCTGAAACGGCGTCGTACTGGTGCTACAGATGCACACGCTTCGTTAACCTATCAGATCACACAAACATCGTCTGTCCACACTGCGATAACGGTTTCGTTGAAGAGATCCAAGCCGGCGACTCACCGCACCACCGTCTCAGTCCTTTTCCCGACGAAACCGTTTCTTCAAGGAGACAAGGCTTCCGCCGCCGTCGTCGTGACGCTGGAAGTCGTTCACCTTTCAATCCTGTCATCGTTCTCCGTGGAAACGGTGAAGACGGCAACGATCAAGACGGTGGTAGCGCTTTTGAACTTTTCTACGATGACGGTGACGGTTCTGGTTTACGTCCGTTACCACCGACTGTTTCCGAGTTTCTACTTGGATCTGGATTTGATCGGTTGTTGGAACAGTTTTCTCAGATCGAGATGAACGGTTTTGGACGGCCGGAGAATCCGCCGGCATCAAAGGCGGCAATTGAATCTATGCCGACGGTTGAGATCTGTGAAACGCAGGTTAGCTCCGATATGCACTGTGCTGTTTGCAAAGAAGCGTTTGAGCTAGGTGTGGAAGCGCGTGAGTTACCTTGCAAGCATATCTACCATTCCGATTGCATTCTTCCATGGCTGACTGTGCGAAACTCATGCCCTGTGTGCCGCCACGAGCTTCCTTCGGATCTTAATAACCCTATGGAAACTAGGGTTTCTGGTCAAATCGATGAAGAAGCTATTGGTTTAACTATATGGAGGTTACCTGGTGGTGGATTCGCCGTTGGAAGATTCTCCGGCGGAAGAAGTGCAGGGGAAAGTCATTTTCCGGTTGTGTACACAGAGATGGATGGTGGACTGAATGCAAACGGAGCTCCGAGAAGAGTTTCTCGAACAGTTAGAAGCCATAGGGTTACTGAAAGTCGCGGAATTGGAAGAGTTTTTCGTAATTTTTTTTCATTCTTTGGGAGAAATGGTTCTTCTAGGTCAAATTCCAATTCTGAGAATGTGTCTGTGAGTAGAAGCCGTAGCTTAGTAAATTCAATTTTTAATAGAAACTGGCGAGGAAGTAGAAGAAGAAGAACTTTGGAGTTGGAAGATTGA 1089 0.4757 MMNSETQPETASYWCYRCTRFVNLSDHTNIVCPHCDNGFVEEIQAGDSPHHRLSPFPDETVSSRRQGFRRRRRDAGSRSPFNPVIVLRGNGEDGNDQDGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICETQVSSDMHCAVCKEAFELGVEARELPCKHIYHSDCILPWLTVRNSCPVCRHELPSDLNNPMETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRVSRTVRSHRVTESRGIGRVFRNFFSFFGRNGSSRSNSNSENVSVSRSRSLVNSIFNRNWRGSRRRRTLELED 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03299 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 226 IPR013083 -
Trre8g03299 362 SMART ring_2 178 218 IPR001841 -
Trre8g03299 362 FunFam E3 ubiquitin-protein ligase RING1-like 140 225 - -
Trre8g03299 362 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Trre8g03299 362 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Trre8g03299 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 57 223 - -
Trre8g03299 362 CDD RING-H2_RNF126-like 178 219 - -
Trre8g03299 362 MobiDBLite consensus disorder prediction 48 100 - -
Trre8g03299 362 Pfam Ring finger domain 177 219 IPR001841 -
Trre8g03299 362 Pfam Protein of unknown function (DUF1117) 243 348 IPR010543 -
Trre8g03299 362 SUPERFAMILY RING/U-box 158 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03299 Trre-Chr8 32047556 32048644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03299 117 225 C3H Transcription Factor Family AT5G01980 45.872 3.48e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03299 K11982 - gmx:100792874 464.536