Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03298 ATGAGTTTTTCTTTTCGAGGGAGTAGGGGAGATATTGAAAGCGGATTTTCAGAATATGTTCCTGAAAGAACCTCAACGCGGGTTCATCCATCTCGGCCAGCTAATAACAATTCTCTAGCTTTTCTTAGTACTGTTCTTTTGATATTCGTAATATTAAACGCCCCTCGGATGCTACATGATTTTTTGCGCTGGATTATACTGGCGGTCTTTGTGGTGGTTACAAGTCTGAGAATGTATGCAACTTGTCAACTGCTTCAAGAACAGGCCAGGGCTCGTGCTGCAGCAGCCTCTGGTTTGCTTGGCCAGGCTGAATTACGTTTCAACGTGCCACCGTCTATTGCGATTGCAACTAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCAAGAATTTGAAGAGCTAGATTATGACACTTTGAGAGCTCTGGAATTTGGTACTGCTTCTAATACTTCTTCAATGACTGACGAAGAGATAAATGCCTTGCCTATTCACAAATATAAAGTTCCTGGCCCAACAAAAGATGGCTCCACTGGTTTGGCATCCTCTTCTTCAGAAGAAGCAGCTGAGATTAAACAAGACTCTAATGGAGCGGAGGGAAGTGCCGAAGGTCTAGAAGATGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAATAGAGGGGAAATTGTCCGCAGCTTACCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTCCGACAACAAGGAACGTGTCCCATATGCAAATTTATCGTGAGGTCGACAAGGCAGGGAAACACAGAGAGCGAGTCAGATGATTCAGATATTGTGTAG 834 0.4424 MSFSFRGSRGDIESGFSEYVPERTSTRVHPSRPANNNSLAFLSTVLLIFVILNAPRMLHDFLRWIILAVFVVVTSLRMYATCQLLQEQARARAAAASGLLGQAELRFNVPPSIAIATRGRLQGLRLQLALLDQEFEELDYDTLRALEFGTASNTSSMTDEEINALPIHKYKVPGPTKDGSTGLASSSSEEAAEIKQDSNGAEGSAEGLEDDELTCTICLDQVNRGEIVRSLPCLHQFHANCIDPWLRQQGTCPICKFIVRSTRQGNTESESDDSDIV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03298 277 SMART ring_2 215 255 IPR001841 -
Trre8g03298 277 Pfam Ring finger domain 214 256 IPR001841 -
Trre8g03298 277 SUPERFAMILY RING/U-box 208 261 - -
Trre8g03298 277 PANTHER TARGET OF ERK KINASE MPK-1 2 262 - -
Trre8g03298 277 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Trre8g03298 277 CDD RING-H2_PA-TM-RING 214 256 - -
Trre8g03298 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 272 IPR013083 -
Trre8g03298 277 MobiDBLite consensus disorder prediction 179 194 - -
Trre8g03298 277 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03298 Trre-Chr8 32038170 32040404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03298 1 277 C3H Transcription Factor Family AT3G55530 61.151 5.06e-113 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03298 K16283 - gmx:100805406 384.03