Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03279 ATGTTATCTACCGATACACTTGTTGAGAATTTTCCTGGTTCTGTCAATGGATGCATGTTTGGAAACATTCCTGTTTCTGTTTTTTCAAATCAGAATCCAGAAAATGGTTTCAAATTTGAAGATTCAAATTCAATTTCAATATCCCCTTCAAGTCATTCAGATTCTGCAAATGATTCTGTTACTCCATCTTCTGGTGAATCTTCTGAGAGTAGTAAATATTCAAATCCTATTCTTAGATTTATAAGTGATATTCTCATGGATGAAGAAGATTATTTGGAGAAAACACCTTGTATGTTGCAAGATTGTTTGAAACTTCAAGCTGCTGAAAAATCATTTTATGATGTTTTAGGTAATAATAATTTTGATGCAGGAACAGTAGTAACTAGTACTAGTAGTTCTTCTGAGAGCTATAGTAATTCTAGTTATACCACTGATAATTCTATAGTTGATTATGATTCACCTGAAAATAATACCTATGAGGTGTTTGATAAAATGCCTCATGATCCAATTAGTGATACACAAGCTGTTTTCAATATTCCAAGTGATGATGCTTGGAAGATGAATCAAGAGGGTACTTTAATTTTGGGTTCTAGAGGAGGATCAAGGGAAAAGAGAGGTCTTTTGATGAATGATGTTGGTATCTTACATGAAGAGGATCTGAGAAGTAGCAAGGTTTCAGCTGTTTATTCTGATGATTCTGAGTTATCAGAGATGTTTGATGAGGTACTTCTTTGTAAGGATGGTAAAAGTCCATCCATTTTTTGTGCTAATTCTGAACAATCGCATTCACATGTTTCTAGTTCATTAGGATCTAATGGAAAAACATCACGTTCTAAGAAAGGTTCAAACAAGAGTAAAAGTAGTCTAAGTACTACAGTAGATTTATGGACTTTGTTAACTCAATGTGCACAAGCTGTTGGTAGCTATGATCAAAGGAATGCAAATGATATACTCAAGCAGATTAGGCAGCACTCTTCATCGCGTGGTGATGGACTACAGCGTTTAGCTCATTACTTTGCTGATGGCCTCGAGGCGCGGTTAACTGCTGGGTCGCCGATGTATAAACAACTTCAGCCGTCGTCTTCTGCAGATATGTTAAAAGCTTTCAAAGTTTACATCACAGCATCTCCATTTCTACGAATGTCGAATTTCTTGGCAAACAGAACTATTCTCAGTCTGGCACAAAACAAAAGCAGCCTTCATATTATTGACTTTGGTGTTTTTTATGGCTTTCAGTGGCCTTGCCTCATTCAGCGTCTTTCGGAAATGCCTGATGGGCCACCGAGGCTCCGTATAACAGGAATCGATCTTCCTCAGCCAGGATTTAGGCCTGCCGAAAGAGTTGAAGATACAGGTCGGCGACTTGAGAAGTACTGCAAGAGGTTTGGAGTTCCATTTGAGTACAATTGTCTTGCACAGAAATGGGACACTATAAGACTTGAGGATCTCAAGATTGATAGAGAAGAAGTAACAGTGGTCAACTGTTTATACAGATTAAAGAACCTTTCCGATGAAACAGTCACAGCAAATTGTCCAAGAGATGCTGTGTTGAAGTTGATAAGGAGGATTAATCCAAACATCTTCATACATGGAGTAGTGAATGGAACTTATAATGCACCATTTTTTCTTACTAGGTTCAGGGAAGCACTGTTTCATTTCTCATCATTGTTTGATATTCTTGAAGCTACTGTGCCGCGTGAAGATCCATATAGGTTGATGTTTGAGAAAGGGTTATTTGGAAGGGATGCAGTAAATGTGATAGCTTGTGAGGGAGCAGAGAGAGTTGAAAGGCCAGAGACTTACAAGCAGTGGCAGGTTAGGAACAAGAGAGCAAGGTTCAGGCAACTTCCATTTGCTCCTGAATTGGTGGATAGGGTGAAAGAAATGGTGAAGAAGGAATATCCGAAAGATTTTGTAGTTGATGAGGATGGGAAGTGGGTTCTGCAGGGTTGGAAAGGACGTATTCTGCATGCTATTTCTTGTTGGGTTCCTGCTTAA 1998 0.3849 MLSTDTLVENFPGSVNGCMFGNIPVSVFSNQNPENGFKFEDSNSISISPSSHSDSANDSVTPSSGESSESSKYSNPILRFISDILMDEEDYLEKTPCMLQDCLKLQAAEKSFYDVLGNNNFDAGTVVTSTSSSSESYSNSSYTTDNSIVDYDSPENNTYEVFDKMPHDPISDTQAVFNIPSDDAWKMNQEGTLILGSRGGSREKRGLLMNDVGILHEEDLRSSKVSAVYSDDSELSEMFDEVLLCKDGKSPSIFCANSEQSHSHVSSSLGSNGKTSRSKKGSNKSKSSLSTTVDLWTLLTQCAQAVGSYDQRNANDILKQIRQHSSSRGDGLQRLAHYFADGLEARLTAGSPMYKQLQPSSSADMLKAFKVYITASPFLRMSNFLANRTILSLAQNKSSLHIIDFGVFYGFQWPCLIQRLSEMPDGPPRLRITGIDLPQPGFRPAERVEDTGRRLEKYCKRFGVPFEYNCLAQKWDTIRLEDLKIDREEVTVVNCLYRLKNLSDETVTANCPRDAVLKLIRRINPNIFIHGVVNGTYNAPFFLTRFREALFHFSSLFDILEATVPREDPYRLMFEKGLFGRDAVNVIACEGAERVERPETYKQWQVRNKRARFRQLPFAPELVDRVKEMVKKEYPKDFVVDEDGKWVLQGWKGRILHAISCWVPA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03279 665 MobiDBLite consensus disorder prediction 263 287 - -
Trre8g03279 665 ProSiteProfiles GRAS family profile. 286 663 IPR005202 -
Trre8g03279 665 MobiDBLite consensus disorder prediction 127 150 - -
Trre8g03279 665 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 251 656 IPR005202 -
Trre8g03279 665 Pfam GRAS domain family 297 662 IPR005202 -
Trre8g03279 665 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03279 Trre-Chr8 31570996 31572993 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03279 35 665 GRAS Transcription Factor Family AT5G59450 43.364 1.39e-177 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre8g03279 GRAS 1.5e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03279 - - lja:Lj3g3v3213190.1 893.264