Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03277 ATGGATCCTCGTTTTAATTCCAATTGCATCAACGGTTTCAAATCAAACCAAATTCCCAATACACTCGATGGATTCATAGATAACCCTTTTCTTCATCAACCACATGATCCAAACACAGAAGAGGATTCTCCTTTGGATGAAACTGATTTTTCTGCAACTGTTCTTCGTTACATAAACCAAATGCTTATGGAAGAAGACATGGAGAAGAAACCATGTATGTTTCATGATTTATTAGCTTTACAAGCTGCTGAAAAATCATTCTATGAAGTCATTGGTGAGACATACCCTTCTTCTAGTTCAATTCCAAATCATCACAATGTGGATAGTCCTGATGATAGTCTTGGTAGTAATTTTAGTACTTATAGCAATTGTGGTAACACTAGTAGTAGTAATAATTCTGTTGAGTTTGAGTCTTATTGGAGTAATTTTGATGTTTCTGAGTATAAGCCCTCTCTACTACAAACCATGTTTCCTGCTGATTTTGTTTTTCAGGCTAGTTCAATGAATGGTAATGGTAATGGTAATACTACTAGCAGTAGCAATTTCGGTGTAACGAATAGTGGATTTTTGGTTAGTTCTAGGGATGGATTTCCTGATTCAAACTTGCTTAGTAAGAGTGAGTCGGTACTGCAATTTCAGAGGGGTGTTGAGGAAGCTAATAAGTTTCTGCCGAAAGTGAATCCCTTGGTTATTGACCTGGAGAACAACCACCCTTTTATCCCTTCTTTTAGGAAGGTTCCTCAAGAGGTAGTAGTTAAGACGGAGAGTAGTGAAAGAGAGCATTTTTCTGTTGAGTCGAGGGGGAGGAAGAATCATGAACGGGGAGATGAAACGGATTTACAAGATGAGAGAAGCAATAAGCAGTCGGCTGTTTACACTGATGACAGTGAGCTGTCGGAGCTGTTTGATAAGGTGTTGCTTGGTACAGGGTGCAGAAAGGAGGGAGCTCCTATGTGTAATAGTAAGGAAGAGATGCCTAATGGACAAGTTACGGGTGTGCAGCAGAAAGAAGAAGCGAACAATTCTGGTGGTGGAAAGAGTCGTGCTAAGAAACAAGGCAGCAAGAAGGGTGTTGTGGATTTGAGGACAACGTTGATTCTGTGTGCACAATCTGTTTCTTCCGATGACCGCGCTACTGCTAAGGAATTATTAAAGCAGATAAGACAACATTCTTCTCCACTTGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCAAATGCCCTTGAAGCACGCTTGGCTGGCACTGGTACTCAGATTTATACTGCTTTATACTCCAAAAGAAACTCTGCTGCTGACATGGTGAAAGCTTATCAAATGTATATTTCAGCCTGTCCGTTCAAGAAGCTTGCTATCATTTTTGCAAACCATACAATTTTGAATCTAGCCAAGGAAGTAGAAACTCTTCACATTGTAGATTTTGGCATCCGTTATGGCTTCCAATGGCCTGGCCTTATTTATCGTCTATCAAAACGACCTGGTGGACCTCCCAAGCTGCGCTTGACAGGGATAGAGCTCCCTCAACCTGGTTTCAGGCCTGCAGAGAGAGTCCAGGAGACAGGGCTTCGCCTGGCAAAGTATTGTGAACGTTTTAATGTTCCATTTGAGTTTAATGCTATTGCACAGAAATGGGAAACCGTCAAAGTTGAGGACTTGAAGATACAGAAAAATGAACTTCTTGTGATGAATTGTATATGTCGATTTAAAAATCTACTCGATGAGACAGTAGTATTGAATAGTCCCAGGGATGCTGTTTTAAAATTAATTAAGAATGCAAATCCCAATATCTTTATACATACTACTGTCAATGGGAGCTATAATGCCCCATTCTTTGTGACACGGTTCAAGGAGGCTCTTTTCCATTACTCTACAATGTTTGATGTGCTTGACATCAATGTTGCTCGTGAAAATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTGGGGGCGGGAGGTAATGAATACTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGAGGCCAGAGACATACAAGCAATGGCAGGTTCGGAACATAAGGGCTGGATTTAGGCAACTTCCCTTGGATAAACATCTCATTAACAAGTTAAGATGCAAGTTGAAAGATGTGTATCATAGTGATTTCATGCTTGTTGAAGATGGCAACTGCATGCTGCAAGGTTGGAAGGGCCGAATAGTGTATGCTTCATCCTGTTGGAGCCCTTATCTTGAATCAAGCAACAATTCAGAAACAAAAAAGATGGATCCAAATTTTCCTCAAGCTTTCATAAATGGTTACTACCACTTTGATGAAGAAGGAAGCATAGTGGTATCTGGATCTGATCCAAATCAGTATGATAGTTTCCTTGATGCTGATCCAAATCAATATGATAACTTCGTTGATGCTGATCCAAATCAATATGATAGCTTCCTTGATGCTGATACACTTGGTTTTGCAGCCACCACCTTCCCTATAGAAGGTTCTATGGGCTTGGTGACAGATCCTTCCCTGGAAGATGCTGATTTTTCAGATACTGGAAAGTTCATAAACCAAATCTTGATGGAAGAAAATGTTGACCAGAGACCATTTTATGATCCACTTAGTTTGCAAATCACAGAAAAATCATTCTATGATGCTCTCTTACACCAAAATAAACCTCCTTCACCTAATCAACATCCCTTAGATATTCATCACTCTGATGGAACAAACAGCACCAGTAGTAACAACAATAGCAATAGTAATAGTAGCAGCGACGATTCTCGAGAGATGATACCCCTTTCCCCTGATACCGCTGTTTCTGATCTTGGTGATCATGTTTTTCAGTTTAATTCCCCTGCCATTTCTCACACTTTCTCTCAACCTCATTCTACTAGTGATGCACTCAGAGATTTGGATTCTTCTATTACAAAGATGGCACAAAACATTTTCAGTGATGCAGATTCTGTTTCCCTATTCAAGAAAGGTGTAGAAGAAGCCAACAAGTTTCTTCCTCCGCAGCCTCAACTCTTGACTGGTTTTGAATCATCCAATTTCAATGTGGTTAAGGAGAAAGAGAATCCATTTGTGTTGAAGGGTCGAAAGAATCACAAGCGAGAAGAAAGCTATAGTAACGAAGAAGACCAAGAAGCTGGTAGGAGAAGTAGCAAACAATCAGCTATTAGTGTGGTTGACGAGGATGAATTAACAGAGATGTTTGATAAAGTTTTGCTTAACGTTGAGCATTTGCCACTATGCAATGGAAATGATTGCTCGCAGACTGGACAAGTGAAAACGGAGCAATCACCTCCATCTAATGAAGGGAAAACTCGTCCTAAGAAACAAGGCAAAAAGAAGGATACAATAGATTTGAGGAATCTTCTGCTTCTGTGTTCACAATCTGTGTATGCCAATGACAACAGGAATGCTAATGAACTACTGAAGCAGATTAGGCAACATTCTTCACCCTGTGGAGATGCACCACAAAGGCTAGCTCATTACTTTGCCAATGGCCTTGAGGCACGCCTTGTCGGTAATGGTACTAATGCACAAGTGTTCTATTCTTCACCGAGTTCCAAGAGGATCAGTACTGCTGAGTTTTTGAAAGCATATCAAGTTCATCTATCTAGTAGCCCATTCAAAAAGTTTGCATTCTTTTTTGCAAATAAAATGATTATGGATGTTGCTGCAAATGCTGAAACCCTTCATATCATTGATTTTGGTATCCTGTATGGTTTTCAGTGGCCAATACTTATTAAGTTTTTAGCAGATAGAGAAGTTGGACCTCCAAAGCTGAGGATCACGGGGATAGAGTTCCCTTTGCCCGGCTTCCGTCCAATGGAAAAAATCGAGGAAACTGGCCGTCGTCTTGCTAACTATTGCAAGCGTTTTAATGTTCCCTTTGAGTTTAATGCCATAGCATCGCGGAATTGGGAAACAATTCGAGTTGAAGATCTTAAAATTGGGAGCAATGAGGTAGTTGTTGTGAACACTTTGATGAGGTTTAAAAATTTACTGGATGAAAGTATTGAAGTGAACAGTCCAAGAAACGTGGTTCTGCAATTGATCAGGAAGATAAACCCTGCTATTTTTGCCCAGTCCATTGTTAATGGATCATATAACTCGCCTTTCTTTGCGACGCGATTTAGGGAGGCGCTGTTTCATTTTTCTGCTCTTTATGATATGTTTGACACTGTCATACCGCGTGAAAACGAACATAGGATGATGATGGAGAAGGAAAGTGTGGGCAGGGAAGCTATGAATGTTGTAGCATGTGAAGGCTTAGAGAGAGTTGAGAGGCCTGAGACATACAAACAATGGCAGGTTAGGAATACAAGAGCTGGTTTCAAGCAGCTTCCATTGAAGTCAGAATTAATGGACAAATTTAGGTTAAAGTTAAGCAAGTACCATAAAGATTTTGTATTTGATGAAGACAACAATTGGATGCTTCAAGGTTGGAAAGGTCGCATTTTATATGCTTCAACATGTTGGGTGCCAGCATAA 4455 0.4038 MDPRFNSNCINGFKSNQIPNTLDGFIDNPFLHQPHDPNTEEDSPLDETDFSATVLRYINQMLMEEDMEKKPCMFHDLLALQAAEKSFYEVIGETYPSSSSIPNHHNVDSPDDSLGSNFSTYSNCGNTSSSNNSVEFESYWSNFDVSEYKPSLLQTMFPADFVFQASSMNGNGNGNTTSSSNFGVTNSGFLVSSRDGFPDSNLLSKSESVLQFQRGVEEANKFLPKVNPLVIDLENNHPFIPSFRKVPQEVVVKTESSEREHFSVESRGRKNHERGDETDLQDERSNKQSAVYTDDSELSELFDKVLLGTGCRKEGAPMCNSKEEMPNGQVTGVQQKEEANNSGGGKSRAKKQGSKKGVVDLRTTLILCAQSVSSDDRATAKELLKQIRQHSSPLGDGSQRLAHCFANALEARLAGTGTQIYTALYSKRNSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPGLIYRLSKRPGGPPKLRLTGIELPQPGFRPAERVQETGLRLAKYCERFNVPFEFNAIAQKWETVKVEDLKIQKNELLVMNCICRFKNLLDETVVLNSPRDAVLKLIKNANPNIFIHTTVNGSYNAPFFVTRFKEALFHYSTMFDVLDINVARENPMRLMFEKEFWGREVMNTIACEGSERVERPETYKQWQVRNIRAGFRQLPLDKHLINKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIVYASSCWSPYLESSNNSETKKMDPNFPQAFINGYYHFDEEGSIVVSGSDPNQYDSFLDADPNQYDNFVDADPNQYDSFLDADTLGFAATTFPIEGSMGLVTDPSLEDADFSDTGKFINQILMEENVDQRPFYDPLSLQITEKSFYDALLHQNKPPSPNQHPLDIHHSDGTNSTSSNNNSNSNSSSDDSREMIPLSPDTAVSDLGDHVFQFNSPAISHTFSQPHSTSDALRDLDSSITKMAQNIFSDADSVSLFKKGVEEANKFLPPQPQLLTGFESSNFNVVKEKENPFVLKGRKNHKREESYSNEEDQEAGRRSSKQSAISVVDEDELTEMFDKVLLNVEHLPLCNGNDCSQTGQVKTEQSPPSNEGKTRPKKQGKKKDTIDLRNLLLLCSQSVYANDNRNANELLKQIRQHSSPCGDAPQRLAHYFANGLEARLVGNGTNAQVFYSSPSSKRISTAEFLKAYQVHLSSSPFKKFAFFFANKMIMDVAANAETLHIIDFGILYGFQWPILIKFLADREVGPPKLRITGIEFPLPGFRPMEKIEETGRRLANYCKRFNVPFEFNAIASRNWETIRVEDLKIGSNEVVVVNTLMRFKNLLDESIEVNSPRNVVLQLIRKINPAIFAQSIVNGSYNSPFFATRFREALFHFSALYDMFDTVIPRENEHRMMMEKESVGREAMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLKSELMDKFRLKLSKYHKDFVFDEDNNWMLQGWKGRILYASTCWVPA 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03277 1484 MobiDBLite consensus disorder prediction 1073 1093 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 316 355 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 254 295 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 254 290 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 324 348 - -
Trre8g03277 1484 ProSiteProfiles GRAS family profile. 352 732 IPR005202 -
Trre8g03277 1484 ProSiteProfiles GRAS family profile. 1099 1482 IPR005202 -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 1014 1038 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 1073 1102 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 873 922 - -
Trre8g03277 1484 Pfam GRAS domain family 1108 1481 IPR005202 -
Trre8g03277 1484 Pfam GRAS domain family 361 731 IPR005202 -
Trre8g03277 1484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 293 725 IPR005202 -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 876 915 - -
Trre8g03277 1484 MobiDBLite consensus disorder prediction 1014 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03277 Trre-Chr8 31558347 31564813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03277 54 733 GRAS Transcription Factor Family AT1G07530 56.657 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre8g03277 GRAS 6.4e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03277 - - cave:132163068 1468.37