Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03265 ATGGGAATTAGTATTGTTTCTGCCATGGGAGTTTGTTTGCGCAACCACGTCAAGGCTGAGAGCCCAATCAATTCTGGGTTAAATTCAAAGAGTGTGAATGTCAGTACAGAAAATATCAGTAGCACATACTGTAAGGTTTCTGATGACCTCGGTGGCTCAAGTAATACTGGAGTACCAGCGGAATCGGTATTGGTCCCTCGGACTGCTCATGCTGTGGATGAGATCTTGCAATTATCTAATTTGAAGAGCTTTACTTCTACAGAACTTCAGGCTGCAACCAGAAATTTTCATGTAGACAGTGTGTTAGGCGATTATGGTATTGGATCAGTTTATAAGGGTTGGATTGATGAAAACTCAACTTCTGCTACCAAACCTGGCAAAGGCATTGCTGTTGCTGTCAAAAGACTTAATCATGATGGCTTCAAAGGTCACAAGGATTTGTTAGCTGAAGCCAACTATCTAGGCCAGCTTTCACATCCTCATCTAGTGAAATTGATTGGATATTGCCTTGAAGATGAAAACAGCCTTATGGTCTATGAATTTATGCTTCGTGGCAGCTTGGAGAATCACTTGTTCATAAGAGGCTCATATTTTCAACCTCTTTCTTGGAACCTACGTTTGAAGGTTGCTCTTGGTGCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTGAAACCAAAGCGACATACCGTGATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGCGCGGGACTGCGGTTGATAAAAGCAGGCTAACCTACGGATATGCAGCTCCAGAATACCTAGCTACTGGTAATCACACTGCTAAGAGTGATGTCTATAGTTTTGGAGTTGTTCTATTGGAAATATTATCAGGGAGGAGAATTGTTGACAAGAATAGACCACAAAGACAACACAATTTGGTGGAATGGGCTAAGCCTTATCTATCCAACAAGGGCAAGATTTTGCGCGTTTTGGATAATCGTCTTGAAGGCCAATACGAATTGGAAGATGTTTATAAGGTTGCTATACTCTCCCTACGGTGCCTTTCAATAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCTAATGTAAATGAATACAATCAGAATCGTTTGCGTAGAAAAAGTGCCGATGATGTTCCCCGTGTTAGAACAGCTGCTGCTTATCCCCAACGCTCTACTTCTATGCTTGAAAGTTAA 1248 0.4143 MGISIVSAMGVCLRNHVKAESPINSGLNSKSVNVSTENISSTYCKVSDDLGGSSNTGVPAESVLVPRTAHAVDEILQLSNLKSFTSTELQAATRNFHVDSVLGDYGIGSVYKGWIDENSTSATKPGKGIAVAVKRLNHDGFKGHKDLLAEANYLGQLSHPHLVKLIGYCLEDENSLMVYEFMLRGSLENHLFIRGSYFQPLSWNLRLKVALGAAKGLAFLHSAETKATYRDFKTSNVLLDSNYNAKLSNFGLAKRGTAVDKSRLTYGYAAPEYLATGNHTAKSDVYSFGVVLLEILSGRRIVDKNRPQRQHNLVEWAKPYLSNKGKILRVLDNRLEGQYELEDVYKVAILSLRCLSIEAKLRPNMDEVVTNLEQLQVPNVNEYNQNRLRRKSADDVPRVRTAAAYPQRSTSMLES 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03265 415 ProSiteProfiles Protein kinase domain profile. 96 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03265 415 PANTHER OS01G0588500 PROTEIN-RELATED 42 376 - -
Trre8g03265 415 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 182 386 - -
Trre8g03265 415 Pfam Protein tyrosine and serine/threonine kinase 98 371 IPR001245 GO:0004672|GO:0006468
Trre8g03265 415 FunFam Serine/threonine-protein kinase BIK1 65 181 - -
Trre8g03265 415 Gene3D Transferase(Phosphotransferase) domain 1 182 397 - -
Trre8g03265 415 Gene3D Phosphorylase Kinase; domain 1 71 181 - -
Trre8g03265 415 SUPERFAMILY Protein kinase-like (PK-like) 77 380 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03265 Trre-Chr8 31284099 31286302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03265 73 372 Glycoside Hydrolase AT3G07070 43.871 4.06e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre8g03265 PK_Tyr_Ser-Thr 2.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03265 - - gmx:100788856 518.464