Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03264 ATGGGAATTAGTATTGTTTCTGCCATGGGAGTTTGTTTGCGCAACCACGTCAAGGCTGAGAGCCCAATCAATTCTGTTTCAGGGTTAAATTCAAAGAGTGTGAATGTCAGTACAGAAAATATCAGTAGCACATACTGTAAGGTTTCTGATGACCTCGGTGGCTCAAGTAATACTGGAGTACCAGCGGAATCGGTATTGGTCCCTCGGACTGCTCATGCTGTGGATGAGATCTTGCAATTATCTAATTTGAAGAGCTTTACTTCTACAGAACTTCAGGCTGCAACCAGAAATTTTCATGTAGACAGTGTGTTAGGCGATTATGGTATTGGATCAGTTTATAAGGGTTGGATTGATGAAAACTCAACTTCTGCTACCAAACCTGGCAAAGGCATTGCTGTTGCTGTCAAAAGACTTAATCATGATGGCTTCAAAGGTCACAAGGATTTGTTAGCTGAAGCCAACTATCTAGGCCAGCTTTCACATCCTCATCTAGTGAAATTGATTGGATATTGCCTTGAAGATGAAAACAGCCTTATGGTCTATGAATTTATGCTTCGTGGCAGCTTGGAGAATCACTTGTTCATAAGAGGCTCATATTTTCAACCTCTTTCTTGGAACCTACGTTTGAAGGTTGCTCTTGGTGCTGCAAAAGGCCTTGCATTTCTTCACAGTGCTGAAACCAAAGCGACATACCGTGATTTCAAGACTTCAAATGTCTTGCTAGATTCAAATTATAATGCAAAACTTTCTAATTTTGGGCTGGCAAAGCGCGGGACTGCGGTTGATAAAAGCAGGCTAACCTACGGATATGCAGCTCCAGAATACCTAGCTACTGGTAATCACACTGCTAAGAGTGATGTCTATAGTTTTGGAGTTGTTCTATTGGAAATATTATCAGGGAGGAGAATTGTTGACAAGAATAGACCACAAAGACAACACAATTTGGTGGAATGGGCTAAGCCTTATCTATCCAACAAGGGCAAGATTTTGCGCGTTTTGGATAATCGTCTTGAAGGCCAATACGAATTGGAAGATGTTTATAAGGTTGCTATACTCTCCCTACGGTGCCTTTCAATAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCTAATGTAAATGAATACAATCAGAATCGTTTGCGTAGAAAAAGTGCCGATGATGTTCCCCGTGTTAGAACAGCTGCTGCTTATCCCCAACGCTCTACTTCTATGCTTGAAAGTTAA 1254 0.4139 MGISIVSAMGVCLRNHVKAESPINSVSGLNSKSVNVSTENISSTYCKVSDDLGGSSNTGVPAESVLVPRTAHAVDEILQLSNLKSFTSTELQAATRNFHVDSVLGDYGIGSVYKGWIDENSTSATKPGKGIAVAVKRLNHDGFKGHKDLLAEANYLGQLSHPHLVKLIGYCLEDENSLMVYEFMLRGSLENHLFIRGSYFQPLSWNLRLKVALGAAKGLAFLHSAETKATYRDFKTSNVLLDSNYNAKLSNFGLAKRGTAVDKSRLTYGYAAPEYLATGNHTAKSDVYSFGVVLLEILSGRRIVDKNRPQRQHNLVEWAKPYLSNKGKILRVLDNRLEGQYELEDVYKVAILSLRCLSIEAKLRPNMDEVVTNLEQLQVPNVNEYNQNRLRRKSADDVPRVRTAAAYPQRSTSMLES 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03264 417 Gene3D Transferase(Phosphotransferase) domain 1 184 399 - -
Trre8g03264 417 FunFam Serine/threonine-protein kinase BIK1 67 183 - -
Trre8g03264 417 Pfam Protein tyrosine and serine/threonine kinase 100 373 IPR001245 GO:0004672|GO:0006468
Trre8g03264 417 PANTHER OS01G0588500 PROTEIN-RELATED 44 378 - -
Trre8g03264 417 SUPERFAMILY Protein kinase-like (PK-like) 79 382 IPR011009 -
Trre8g03264 417 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 184 388 - -
Trre8g03264 417 Gene3D Phosphorylase Kinase; domain 1 73 183 - -
Trre8g03264 417 ProSiteProfiles Protein kinase domain profile. 98 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03264 Trre-Chr8 31284099 31286302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03264 75 374 Glycoside Hydrolase AT3G07070 43.871 4.61e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre8g03264 PK_Tyr_Ser-Thr 2.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03264 - - gmx:100788856 516.153