Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03262 ATGGGTAACGGAATAGGAAAATTAACGGTGTGTTTCACAGGAAACAACGGTGGTAACAGAAAACATGACATATCCATTTTAATAACGGATCCTTTAGACGAAGGTCTTGGTCACTCTTTCTGTTATGTTAGACCCGACCCGACCTGGTTATCTAGTTCCAAAGTTCATTCTGAAGAAACAACAACTTTCAGAACTATCTCTGGTGCTTCTGTCAGCGCTAACACGTCGACGCCGTTATCAACGGCGTTTATGGATTTATACTCTTACGGTTGTTTTGATAGAGCTGCTGCGTTTGAAAGTTCAACTTCTTTTGCTTCTCTTCCTTTACAACCGATTCCGAAGAATCTAATCGGTTCGGGTTCGGATCCTTTTTCTGGTAATTTCGGTGGTGGTGGTGGTGGTGGGTTTCCGAGTTCCGGTCCACTTGAGCGTGGTTTTATGTCCGGTCCGATTGAGCGTGGGTTCATGTCCGGTCCAATTGATCGCGGTTTATTTTCCGGTCCGATTGAAAAAGAAAACTCCGATCAGTTTCAGAGAAGCTTTTCTCATAGTGGATTAGGTTTTTCTGTTCGACCTAGAACGAGAAAAGAGAAATGGATTCGTGTTCTTCAGAGAGCGATTTCGAAGACTCTATCACGTGGACAGAACTCTATTGTTACTCCGATCAAAGGTGTAGCCGTTAAGGAACCACCGGAGTGGATTCTTGCCGGTGAGAAGCATCATAACGAGAATTTGACTGTGAGTAGTTTGAATTTGAGTAGTGAAGGTAGTTTGGAAGATGATGATTCATTAAGTAGTCAGAATCTTCAGTGGGCTCAGGGAAAAGCAGGTGAAGATCGTGTTCATGTTGTTGTTTCTGAAGAACATGGTTGGGTTTTTGTTGGAATTTATGATGGTTTTAATGGTCCTGATGCACCTGATTATTTACTTTCAAATCTTTATACTTTTGTTCATAAGGAACTTAAAGGGTTGCTTTGGGATGATGGTGGTTCACCTGATAATTTGAATTCGAAACCGCGTGATTCGGTTGATGATGATGTTGATGTTGTTGTTGGGAATGAAGATAAGGTGTTTGATGATTGTTCTCAATGTGTTGATCAAGAGAAAATGGATTCGGTTTCCAAGAGAAAAAAGAGAGGTAAGAATTCGAAGAATAAGTACAGAGATGCAGCGAAGAAACACGAAGAGAATCATAGGAGATGGAAGTGTGAATGGGATAGAGAAAGATTAGAGCTTGATAGAAGATTGAAGGAACAACTGAGTGGTGGTGACGGTGACGATAATTCTGTTAATCATTCAGATGTTTTGGAAGCTTTATCTCGAGCTTTGAGGAAAACTGAGGAGTCTTATCTTGATGTTGCTGATAAGATGGTGACGGAGAATCCGGAACTTGCTTTGATGGGTTCATGTGTTCTTGTGATGTTGATAAAAGGGGAAGATGTTTATGTGATGAATGTGGGAGATAGTAGAGCTGTGTTGGCACAAAAAGCTGAACCTGATTATTGGATTGGGAAAATTAGACAGGATTTGGAGAGGATTAATGAAGAGACAATGCATGATCTTGAATCATGGGATGATGCTGATAAATCAAATGTTGTTCCTAGTTTAAGTGCTTTTCAGCTTACCAAGGATCATAGTACCAATGTTGAAGAGGAAGTAATCAGAATAATAAAAGAGCACCCGGATGATCCTTGTGCTGTGGTCAATGATCGTGTGAAGGGATCTCTCAAGGTTACTCGAGCATTTGGCGCTGGATTTCTCAAACAGCCCAAATGGAACAATGCACTTCTGGAGATGTTTAGAATAGACTACGTAGGAAATTCTCCATACATCACTTGCCAACCATACCTTAAACACCACAGATTAGGTCAAAAAGACAAATTTTTGATTCTATGCTCCGACGGACTCTATCAATACTTATCAAACGAAGAAGCAGTAGCTGAAGTTGAGCTTTTCATCACATTACAACCCGAAGGAGACCCTGCTCAACATTTGGTTGAAGAAGTCTTGTTTCGTGCTGCGAAGAAAGCTGGTTTGGATTTCCACGAATTGCTCGAAATTCCACAAGGCGATAGGCGGCGTTACCATGACGATGTTTCCATCATTGTTATTTCCTTGGAAGGAAGGATATGGAGATCATGTGTATAA 2148 0.4106 MGNGIGKLTVCFTGNNGGNRKHDISILITDPLDEGLGHSFCYVRPDPTWLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFMDLYSYGCFDRAAAFESSTSFASLPLQPIPKNLIGSGSDPFSGNFGGGGGGGFPSSGPLERGFMSGPIERGFMSGPIDRGLFSGPIEKENSDQFQRSFSHSGLGFSVRPRTRKEKWIRVLQRAISKTLSRGQNSIVTPIKGVAVKEPPEWILAGEKHHNENLTVSSLNLSSEGSLEDDDSLSSQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYTFVHKELKGLLWDDGGSPDNLNSKPRDSVDDDVDVVVGNEDKVFDDCSQCVDQEKMDSVSKRKKRGKNSKNKYRDAAKKHEENHRRWKCEWDRERLELDRRLKEQLSGGDGDDNSVNHSDVLEALSRALRKTEESYLDVADKMVTENPELALMGSCVLVMLIKGEDVYVMNVGDSRAVLAQKAEPDYWIGKIRQDLERINEETMHDLESWDDADKSNVVPSLSAFQLTKDHSTNVEEEVIRIIKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYITCQPYLKHHRLGQKDKFLILCSDGLYQYLSNEEAVAEVELFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03262 715 Gene3D - 240 710 IPR036457 -
Trre8g03262 715 PANTHER PROTEIN PHOSPHATASE 2C 260 704 IPR015655 GO:0004722|GO:0006470
Trre8g03262 715 Pfam Protein phosphatase 2C 416 662 IPR001932 -
Trre8g03262 715 SMART PP2C_4 262 704 IPR001932 -
Trre8g03262 715 SUPERFAMILY PP2C-like 275 707 IPR036457 -
Trre8g03262 715 CDD PP2Cc 412 706 IPR001932 -
Trre8g03262 715 MobiDBLite consensus disorder prediction 369 393 - -
Trre8g03262 715 Coils Coil 384 404 - -
Trre8g03262 715 ProSiteProfiles PPM-type phosphatase domain profile. 261 706 IPR001932 -
Trre8g03262 715 FunFam probable protein phosphatase 2C 4 236 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03262 Trre-Chr8 31113921 31116666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03262 1 715 PP2C-type Phosphatase Gene Family AT1G07630 68.501 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03262 - - pvu:PHAVU_011G064200g 1108.59