Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03251 ATGGAAATTGAGAAAGTAAATTCTATAATTGACCTAGTGAATGAGATAGCTAACATCTCAGATTTCAGACCTATGGTGAAGAAACAGTATTGTAATTTAGCACGAAGGTTGAAGCTGTTGATCCCTTTATTTGAAGAGATTAGGGATATGAAAGATTCAATTCCGATTGGTACTTCAAAAGCTGTTATTTTGTTCAAAGAAGCTCTTGAATCAGCTAGAGAACTTCTCAGATTTGGAAGTGAAGGAAGCAAGATTTACATGATCCTTGAGAGGGACCAGATTATGAATAATTTCTACGAGGTGACAGCTCGATTGGAACAATCACTGGATGGAATTTCCTACGATAAGCTTGACATATCTGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACTCAGTTCAGAAGAGCCAAAGGCAGAGTTGATGAACCAGATGCCAAGTTGTATGAAGATATGTCATCCCTTTACAACAATAGCAGCGACGCAGCTACAGATCCAGCTATTCTAAGTCGATTAGCAGACAAATTGCAATTAATGGGAATAGCTGATCTTACACAAGAATCACTTGCTTTGCATGAGATGGTGGCAGCAAGTAGTGGAGATCCAGGGGCGCGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCATGTGCAAATAGAAAACCTAGTCAAGGATGATACTGCAATAGCAAAAGGTGTTTCTTCAGGATTTTACGGACCAGAGGAAAATGATAATAATCATCAGGCCCCTGTTATCCCTAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGACATATGAGCGTTCCTGTATTGAGAAATGGTTGAAAGACGGACATGGGACGTGCCCTAAAACACAGCAGACTCTCACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGTCTAATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCGCTTCTGAGCCTAGTAAATCAGCATCAGCCTGCTCCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCTGGTGGTCCTGAAGACCAGAGATCAGCAGCGGGCGAGATCCGCCTACTTGCAAAACGCAATGCAGATAATCGTGTAGCTATTGCTGAAGCTGGCGCAATACCTCTCCTTGTTGGTCTCCTCTCCGTGCCCGACTCCCGAACTCAAGAGCATGCTGTTACAGCGCTTCTGAATCTCTCCATATATGAGAGTAACAAAGGACACATTGTTTCCTCAGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAGAGGGGAAGCATGGAAGCTCGGGAAAACGCAGCAGCAACACTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTACAATTGGTTCTTCGGGAGCCATATCACCATTAGTGACACTGCTGAGTGAAGGTACCCAAAGGGGTAAGAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATTTACCAGGGAAACAAGGGAAAGGCAGTGAGGGCTGGTGTCATTCCCACGCTGATGCGATTACTGACAGAACCTGGCGGGGGAATGGTGGATGAAGCATTGGCCATTTTAGCCATTTTGTCTAGTCATCCAGAAGGGAAGGCTGCCATTGGGTCTGCCGAGGCAGTGCCGGTTTTAGTAGAATTTATCGGTACTGGATCGCCAAGGAACAAAGAGAACGCAGCTGCTGTTTTAGTTCACCTTTGTTCTGGTGATCGACAATATATAACACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTGGAATTGGCACAAAATGGTACCGACAGAGGCAAAAGAAAGGCAACACAATTGATAGAGCGTATTAGCAGGATCCGTGAGCAGGAGCAGCAGGAAGTTCAGGCACAAACCGAACTTCAAGCTCAGAACGATGATATCCAACCACCTTTGATCATTAACCTCGATATTGACACCTGA 1989 0.4414 MEIEKVNSIIDLVNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDSIPIGTSKAVILFKEALESARELLRFGSEGSKIYMILERDQIMNNFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSSLYNNSSDAATDPAILSRLADKLQLMGIADLTQESLALHEMVAASSGDPGARIEKMSMLLKKIKDHVQIENLVKDDTAIAKGVSSGFYGPEENDNNHQAPVIPSDFKCPISLELMMDPVIVSTGQTYERSCIEKWLKDGHGTCPKTQQTLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSASEPSKSASACSPAERSKIESLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGHIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILSSHPEGKAAIGSAEAVPVLVEFIGTGSPRNKENAAAVLVHLCSGDRQYITQAQELGVMAPLLELAQNGTDRGKRKATQLIERISRIREQEQQEVQAQTELQAQNDDIQPPLIINLDIDT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03251 662 CDD MLKL_NTD 6 135 - -
Trre8g03251 662 FunFam RING-type E3 ubiquitin transferase 338 489 - -
Trre8g03251 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Trre8g03251 662 FunFam RING-type E3 ubiquitin transferase 2 115 - -
Trre8g03251 662 CDD RING-Ubox_PUB 256 308 IPR045210 -
Trre8g03251 662 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Trre8g03251 662 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Trre8g03251 662 PANTHER U BOX DOMAIN-CONTAINING 25 626 - -
Trre8g03251 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Trre8g03251 662 SUPERFAMILY RING/U-box 247 331 - -
Trre8g03251 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 328 IPR013083 -
Trre8g03251 662 Gene3D - 1 114 IPR036537 GO:0007166
Trre8g03251 662 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Trre8g03251 662 FunFam RING-type E3 ubiquitin transferase 529 648 - -
Trre8g03251 662 MobiDBLite consensus disorder prediction 328 348 - -
Trre8g03251 662 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Trre8g03251 662 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Trre8g03251 662 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Trre8g03251 662 SUPERFAMILY ARM repeat 353 637 IPR016024 -
Trre8g03251 662 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Trre8g03251 662 SMART arm_5 464 504 IPR000225 GO:0005515
Trre8g03251 662 SMART arm_5 546 586 IPR000225 GO:0005515
Trre8g03251 662 SMART arm_5 423 463 IPR000225 GO:0005515
Trre8g03251 662 SMART arm_5 588 628 IPR000225 GO:0005515
Trre8g03251 662 SMART arm_5 382 422 IPR000225 GO:0005515
Trre8g03251 662 SMART arm_5 505 545 IPR000225 GO:0005515
Trre8g03251 662 Gene3D - 337 654 IPR011989 -
Trre8g03251 662 Coils Coil 616 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03251 Trre-Chr8 30846167 30851059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03251 1 646 U-box Gene Family AT3G46510 69.183 0.0 892