Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03245 ATGATATATGGAAAATATATCCAAACGTATAATTTATTCAATCTACATTCCAGGTTGTTGAGCATGGTCTCGGTCATCTGCCTTTCACCGAAAAGCAAGTTGCCACTCCAACAGGATCTGTCTGTACTGGTGTTGATTTCTGAAAGAAATTATACGGTGTTTCAATTATTCGAAGGTGAGCTAAGCTTTGAACTAGGTATTGATTTTTGCAGGGATGATTTTAGAAAAACATTGAAGGAAGTTAATTATGATTCGAAGGATGGTAAAAGGGTTAGTAAAGAGATTGGTGAGAAGTGGTGGTCCATGACTGATGCAGAGAAAAAGCCTTATTTGGATAGAGTTATTGAACTGAAGGCAGAATATGAGAAGCCTATGGAAATCTATAATGCTACTAAAAAGAAAGATCAACAAGAGGGTTATGACAAGTCTAATAAGGAAGCCACTGCAGTACCGACGAGGCAAGAAATAGTAACTTTACAAGGTTCAGAGCTGCTTCCTTATTTTTTCAGAATATTGATCTATATGTTCTCTCTTCCCATTTTGTAA 546 0.3645 MIYGKYIQTYNLFNLHSRLLSMVSVICLSPKSKLPLQQDLSVLVLISERNYTVFQLFEGELSFELGIDFCRDDFRKTLKEVNYDSKDGKRVSKEIGEKWWSMTDAEKKPYLDRVIELKAEYEKPMEIYNATKKKDQQEGYDKSNKEATAVPTRQEIVTLQGSELLPYFFRILIYMFSLPIL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03245 181 SUPERFAMILY HMG-box 75 140 IPR036910 -
Trre8g03245 181 Gene3D High mobility group box domain 49 152 IPR036910 -
Trre8g03245 181 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 72 146 IPR031061 -
Trre8g03245 181 Pfam HMG (high mobility group) box 72 128 IPR009071 -
Trre8g03245 181 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 47 129 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03245 Trre-Chr8 30616025 30619586 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre8g03245 HMG_box 2.7e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03245 K25507 - gmx:100810345 102.449