Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03231 ATGGAGAGTGAGAATAATGAGAATGAGATGAATGAGAATGAGAATAATAATATATCATCAAGTTCATCATCATCATCATCATCAAGATGGAACCCAACAAAAGAACAAATAAGCATGTTGGAGAATCTGTATAAGCAAGGAATAAAGACACCAAGTGCTGAAGAAATACAACAGATAACTGCTAGGCTTAGAGTGTATGGTCACATCGAAGGAAAGAATGTCTTTTACTGGTTTCAGAATCACAAAGCTAGACAGAGACAGAAACAGAAACAAGAGAATATGGCTTATTTCAATCGACTTCTTCATAGACCTCATCCCATTTTCCCTTCACCTCCAATTTATCAAAATGCTATCTGCACACAATATTGCGTACCACAGCCACAAAGTCAAGAATTCAACTATTACCCTCAAAATCCAAAAGTGCTTCTACCACCATCAGTAGGTTATAGAAGGAACCAAGCTGAGAAAGTTATGTCAAATATTTGCAATAATCCAATGGTATATAATGAAAACAACATGCAACAGAGAAACTCTGGTCATGAAACGTTGGATCTGTTTCCTCTTCATCCAACTGGCATATTAGAAGGGAAAGCAACAGATAATAAAGTGTCTTCTATTGTTTCAGTCTCTGCTGATAGTTCTACTGATACTCATCATTCTGGTTCTCTTCAACATGTTATCAATCAACATGATGGTTGTCATGAAAATCAACCCTTCTTTGACTTTTTTAATAATTCTGCTGGATATCGTTCTTAA 756 0.3571 MESENNENEMNENENNNISSSSSSSSSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQKQENMAYFNRLLHRPHPIFPSPPIYQNAICTQYCVPQPQSQEFNYYPQNPKVLLPPSVGYRRNQAEKVMSNICNNPMVYNENNMQQRNSGHETLDLFPLHPTGILEGKATDNKVSSIVSVSADSSTDTHHSGSLQHVINQHDGCHENQPFFDFFNNSAGYRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03231 251 Gene3D - 9 101 - -
Trre8g03231 251 FunFam WUSCHEL-related homeobox 4 27 94 - -
Trre8g03231 251 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
Trre8g03231 251 MobiDBLite consensus disorder prediction 10 32 - -
Trre8g03231 251 SUPERFAMILY Homeodomain-like 23 94 IPR009057 -
Trre8g03231 251 CDD homeodomain 29 89 IPR001356 GO:0003677
Trre8g03231 251 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 8 218 IPR044555 GO:0003700|GO:0099402
Trre8g03231 251 MobiDBLite consensus disorder prediction 1 32 - -
Trre8g03231 251 SMART HOX_1 25 92 IPR001356 GO:0003677
Trre8g03231 251 Pfam Homeodomain 27 87 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03231 Trre-Chr8 30315127 30316759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03231 12 247 Wox Gene Family AT5G59340 41.636 2.72e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre8g03231 Homeodomain 5.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03231 - - pvu:PHAVU_011G064900g 260.381