Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03229 ATGGCTGGAAAAGGTGAAGGTCCTGCTATCGGAATCGATCTCGGAACAACTTATTCTTGTGTTGGTGTTTGGCAACATGATCGTGTTGAAATCATTGCAAACGATCAGGGTAACAGAACTACTCCTTCTTATGTTGCGTTCACTGATACAGAACGGTTGATCGGTGATGCTGCCAAGAATCAAGTTGCTATGAACCCTACTAACACAGTTTTCGATGCCAAGCGTTTAATTGGAAGGAGATTTAGCGATGCTTCAGTACAGAGCGACATGAAGTTGTGGCCATTCAAGGTGATTCCCGGCCCTGGTGATAAGCCAATGATTGTGGTGAACTATAAAGCAGAAGAGAAGCAGTTTTCTGCTGAAGAAATATCTTCAATGGTTCTTATGAAGATGAAGGAGATTGCTGAGGCTTATCTTGGCACAACTATTAAGAATGCTGTTGTGACTGTGCCGGCTTACTTTAATGATTCACAACGTCAAGCTACGAAAGATGCTGGTGTGATTTCTGGGCTTAATGTGATGAGGATCATTAATGAGCCCACTGCTGCTGCTATTGCTTATGGTCTTGATAAGAAAGCTACAAGCAGTGGTGAGAAAAATGTTCTTATTTTTGACCTTGGTGGAGGGACTTTTGATGTTTCTCTTCTTACCATTGAAGAAGGTATTTTTGAGGTGAAGGCTACGGCTGGTGATACACATTTGGGAGGTGAAGATTTTGATAACAGAATGGTGAACCATTTTGTTCAGGAGTTCAAGAGGAAGAATAAGAAGGACATTAGTGGAAATCCCAGGGCACTTAGGAGGTTGAGAACTGCATGTGAGAGGGCTAAGAGGACACTTTCCTCTACAGCTCAAACCACCATTGAAATTGATTCTTTGTTTGAGGGTATTGACTTTTATACTACTATTACTCGTGCTCGTTTTGAAGAGCTTAACATGGATTTGTTTAGGAAGTGTATGGAGCCTGTTGAGAAGTGTCTCAGGGATGCTAAGATGGACAAGAACAGTGTCCATGATGTTGTTCTTGTTGGTGGGTCTACAAGGATTCCCAAAGTTCAACAACTTTTGCAAGATTTTTTCAATGGCAAAGAGCTGTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCCGCAGTTCAAGCCGCTATTTTGAGTGGTGAAGGTAATGAGAAGGTGCAGGATTTGTTGTTGCTTGATGTTACTCCTCTATCTCTTGGTTTGGAGACTGCCGGAGGAGTCATGACTGTGTTGATTCCGAGAAACACAACCATTCCTACCAAGAAGGAGCAGGTGTTTTCAACCTACTCTGATAATCAACCTGGTGTGTTGATTCAGGTCTATGAAGGAGAAAGAACAAGGACTCGTGATAACAACTTGTTGGGCAAGTTTGAGTTGTCTGGAATTCCTCCTGCTCCTAGGGGTGTTCCTCAGATCAATGTTTGCTTTGACATTGATGCCAATGGTATTTTGAATGTCTCGGCAGAGGATAAGACTACAGGCCAGAAGAACAAGATCACAATTACTAATGACAAGGGTAGGCTCTCGAAGGAGGAGATCGAGAAGATGGTACAAGAAGCTGAGAAGTACAAATCTGAGGATGAGGAACACAAGAAGAAGGTGGAGGCGAAAAATGCTCTTGAGAACTATGCCTATAACATGAGGAACACGATCAAGGATGACAAGATTGCTTCTAAGCTGTCTGCTGATGATAAGAAGAAGATTGAAGATGCCATTGAGCAGGCTATTCAATGGCTGGATGGAAACCAACTTGCAGAGGCTGATGAATTTGAAGACAAGATGAAGGAGTTGGAGGGTATTTGCAATCCTATCATTGCTAGGATGTACCAAGGTGCTGGTGGTGATGCTGGTGGAGCCATGGATGAGGATGGTCCTACTACTGGCAGTGGAAGCGGCGCTGGACCCACAATTGAGGAAGTTGATTAA 1950 0.4338 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQSDMKLWPFKVIPGPGDKPMIVVNYKAEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEQAIQWLDGNQLAEADEFEDKMKELEGICNPIIARMYQGAGGDAGGAMDEDGPTTGSGSGAGPTIEEVD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 477 493 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 337 353 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 396 415 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 36 48 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 146 166 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 209 219 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 369 389 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 8 21 - -
Trre8g03229 649 PRINTS 70kDa heat shock protein signature 58 66 - -
Trre8g03229 649 FunFam Heat shock 70 kDa protein 539 649 - -
Trre8g03229 649 Gene3D Actin; Chain A, domain 4 235 318 - -
Trre8g03229 649 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Trre8g03229 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Trre8g03229 649 FunFam Heat shock 70 kDa protein 71 126 - -
Trre8g03229 649 FunFam Heat shock 70 kDa 235 318 - -
Trre8g03229 649 Gene3D - 71 126 - -
Trre8g03229 649 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Trre8g03229 649 FunFam Heat shock protein 70 10 197 - -
Trre8g03229 649 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Trre8g03229 649 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Trre8g03229 649 Gene3D - 10 384 - -
Trre8g03229 649 FunFam Heat shock 70 kDa protein 198 260 - -
Trre8g03229 649 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Trre8g03229 649 MobiDBLite consensus disorder prediction 620 649 - -
Trre8g03229 649 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Trre8g03229 649 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Trre8g03229 649 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Trre8g03229 649 Coils Coil 521 541 - -
Trre8g03229 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Trre8g03229 649 FunFam Heat shock 70 kDa 391 545 - -
Trre8g03229 649 PANTHER HEAT SHOCK PROTEIN 70KDA 9 583 IPR013126 GO:0005524|GO:0140662
Trre8g03229 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Trre8g03229 649 Gene3D - 546 619 IPR029048 -
Trre8g03229 649 Gene3D - 192 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03229 Trre-Chr8 30217795 30220286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03229 1 631 Calmodulin-binding Proteins AT3G12580 93.681 0.0 1229