Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03228 ATGGCGAAGACACTTATTTCATCTCCATCATTCCTCGGAATGCCACTTCCTTCACTTCATCGTAAATTCTCCCCTAATCGTACTAGATTATTCACCAAAGTTCATTTCAGTTTCCATGAACTTCCTCCAATTCAATCCATAAATCATTCCATTGACTTGTCCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCTGACGCCACCGTTGCGGCCGATGCTGCGGTTTCAACTGATGTTACCACCGTGCAGAAGAACGGAGGTTGGTTCGGCTTCATTTCCGATGCCATGGAGTTTGTTCTCAAGGTGTTAAAGGATGGTTTGTCTTCCGTGCATGTGCCTTACTCATATGGATTTGCTATCATATTGCTCACCGTTATTGTTAAAGCTGCTACACTTCCCTTGACAAAGCAACAGGTTGAATCAACACTAGCTATGCAAAACCTTCAACCTAAAATTAAGGCCATTCAAGAAAGATATGCCGGCAATCAGGAAAGAATACAACTTGAGACTTCAAGGCTATATACCCAGGCTGGGGTTAACCCATTGGCAGGTTGTTTACCAACATTGGCCACTATTCCAGTCTGGATTGGTCTATACCAAGCTCTATCTAATGTGGCAAATGAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCTTCTCTGGGTGGTCCCACTAGTATTGCTGCTAGACAAAGTGGATCCGGAATTTCTTGGCTTTTTCCGTTTGTGGATGGTCATCCACCTTTGGGTTGGCAAGATACTGCAGCATATCTTGTTTTACCTATTCTTCTTATTGTTTCTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGACAAATGATCCTACTCAAAAGAATACACTTCTTATTTTCAAGTTTCTGCCACTCATGATCGGCTACTTCTCACTATCTGTGCCATCAGGACTAACAATTTACTGGTTTACGAATAATGTCCTGAGCACAGCTCAGCAAGTATGGTTGCGCAAATTAGGAGGTGCAAAGCCTGCTGTTAATGAAAATGCTGGTGGAATTATTACGGCAGGACAAGCTAAGAGATTAGCTTCTAAGCCAGAAAGGGGTGGTGAAAGGTTTGCACAGTTAAAAGAAGAGGAGAAGAAGAAAAAGTTAAACAAGGCACTGCCAGTGGAGGAAGTTCAGCCTCTGGCTTCTGCTTCTGTTTCTGATGATGGCTCAGATGTAAAAAATGACAAGGAACAAGAAGTTACAGAAGATGAGTATGCTACTAAAGTTAGCCAAGAGGTTAAAAGTTTTTCTAGGGAAAGAAGAAGTAAGCGTTCAAAGCGAAAGCCTGTTGTATGA 1332 0.4242 MAKTLISSPSFLGMPLPSLHRKFSPNRTRLFTKVHFSFHELPPIQSINHSIDLSGVFARAEGLLYTLADATVAADAAVSTDVTTVQKNGGWFGFISDAMEFVLKVLKDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWQDTAAYLVLPILLIVSQYVSMEIMKPPQTNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAGGIITAGQAKRLASKPERGGERFAQLKEEEKKKKLNKALPVEEVQPLASASVSDDGSDVKNDKEQEVTEDEYATKVSQEVKSFSRERRSKRSKRKPVV 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03228 443 CDD 5TM_YidC_Alb3 120 333 IPR047196 -
Trre8g03228 443 Pfam 60Kd inner membrane protein 119 333 IPR028055 -
Trre8g03228 443 PANTHER OXA1 69 378 IPR001708 GO:0016020|GO:0032977
Trre8g03228 443 MobiDBLite consensus disorder prediction 379 443 - -
Trre8g03228 443 MobiDBLite consensus disorder prediction 401 431 - -
Trre8g03228 443 NCBIfam membrane protein insertase YidC 118 332 IPR028055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03228 Trre-Chr8 30189182 30195122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03228 23 389 Chloroplast and Mitochondria Gene Families AT2G28800 69.811 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03228 K03217 - gmx:100817173 657.521