Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03223 ATGGAGTTTTCGGTTGAGGCGGTGGGAAGCATAAGCAACTGTTTCGTATCCCTTCCTTTACCTCTAATCCAAACTCTTCAATCCACAGCTTCATCTCATCTTCCACCAATTCTCGCTCTTCACCTTCGTTCTCCTACTCACCCTCCTCATTCCTGGTTCGTCGCTTGGTCCGGTGCTACTTCTTCTTCCTCTTCAACCATACAAGTTTCTCAACAATTTGCCGAATGCGTTTCTTTACCGATTCATTCTCCAGTTCAAGTTCAAGTTGCTTCTAACGTTCCTCACGCTTCTTCTGTCTCTATAGAGCCACATACTGAAGATGATTGGGAAATTTTGGAACTTAATTCGGAACAAGCTGAGGATCAAATTCTCAATCAGGTTAGAATTGTTCATGAAGGGATGAGGTTTCCTTTACGGTTGAATGGTCACACTGTCATCACATTCCATGTTGCTTCTGTTTTTCCCAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAGGTTGAGGTTGCTCCAAAGACGCGCAAAAGGAATTCAGATTCAGCAGGAGATTCACATGTAGGTTCTAATATTAGAGAGCATACTGCAAAGATGCTGCTCCGTTTACAAGAGCCAAATGATTTATGTCGTACCAGTACTCATATCAAAGGTGTTGAGCTTCATGTAGGCCTTACTTCGGTTGCTGTTGTTCATCCAGAAACAGCCAAGCGCTTCTCATTTAACACGCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCAAAAGAGAATGTTAATAATTCCAGAACTAAATCCAATATTATGAAAGCCAAAGGTGGTTCAGCTGTTAATGAAGTTGAGAATGGAAATACTGACAAGAAGGAACATCGGCAAGCAGTTGTGCATCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTAATGCTAGCCAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTGCATTCATGGGTTTATTTGAAGGCATCTGATATTATTTTGGAAAAAACTATGCCTTCCATTTCTCTTTGTCCTTGTCGATTCAAACTGGTAAGGCAGGAGAATGCTGTTGAGAAAGATGGTCTAGATGATTTTCACAGCCACAGGAATCACATTGATGAAAAATTGCACGGGAAAGACACTTCAGGTGTCTTTTTGGATACCATAAATTGGTCAATGCACAATGAAGTTGTTGCAGCTCTTACTGATGAATGCAATTACAGAGAAGAGGAAGAGCTTGAGGCAATTACTTCCATTATGGGGATGGAATTTAATTCATTGGTTCTCGGTAGTAAAACCTTGCTCCATTTTGAATTAAGCTGTTACAAGATTGGGAGTGATGAGAAGCTTCAGCTGACTTCTTCTGGAAACTGTGGCAAGGCAGCCGAAATGTTATTTTTATTGAACTTTGGTGAAGAAGATCTGCATCATGGAAAACTTAATGCATATGAAGTTTCACTTGGTGGCAGACTCAATAACGTCAACGTTGAGGATCTGAAGTTTTTTGAAAGAATGAAATTGGGTGATCCCATTTCCTTTCATTCTTTGGACGAGAGAGCCTCTGCAGACCACATTCGTTCAAATGTACCTTTCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATAGGATGTTGGTATTGTTATCTTCAGCATGTGGTTTGTGGTTTGGCTCATGCAACCTGCCACTTCCTGGACATGTTGTAATATATGGACCTCCAGGCTCTGGGAAAACTATACTAGCAACGAATGTGGCAATATCCCTTGAGAAGCATGAAGACATCTTAGCGCACATAATTTTTGTTTCCTGCTCAAAACTTGCTTTGGAGAAGGTCCCAGTTATCCGTCAAGAACTTGCAAACCATATAACTGAAGCTATAAACCATGCACCTTCTGTTGTCATCTTTGATAATCTTGATAGTATAATTTCTACCCCTGATTCTGAAGGTTCTCAGCCATCAATGTCTGTTGCTGGACTCACAGATTTTCTAGTTGACATCATGGATGAATATGGGGAGAAGAGGCGAAATTCATGTGGATTTGGTCCAATAGCTTTCATAGCTACCATACAGTCCCTAGAGAGTATACCACAATCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATTAAGCTGCCAGCTCCTGCAGCTTCTGAGCGCAAAGCTATGTTGAAGCATGTAATACAAAGACGACACTTGCAATGCAATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGCTATGATCTGGAAATTTTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCCATTTATGAACATGAGGGTCCTGCTTTACTGCGAGAGGATTTCTCTCAGGCAATGCATGATTTTCTCCCAGTTGCAATGCGTGACATCACAAAATCTGTTTCTGATGATGGCCGTTCTGGATGGGATGATGTCGGTGGTCTTGTTGATATTCGAAATGCTATTAAAGAGATGATCGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCGCAAGCACCATTAAGGTTGCGGTCAAATATCCTTTTATATGGTCCTCCTGGTTGCGGCAAAACTCACATAGTCGGTGCTGCTGCCGCTGCTTCTTCACTTCGATTCATATCAGTGAAAGGGCCTGAACTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATTTTTTCTAAAGCAGCAGCTGCAGCACCGTGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCTAAGAGAGGGCACGACAATACTGGAGTAACTGACCGTGTTGTCAATCAATTTTTGACAGAGTTAGACGGAGTTGAAATTTTAGCCGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATCTACTGGATGCAGCATTGTTGAGACCGGGTAGGTTAAATCGTCTTCTATTTTGCGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACTGTACTTTCTAGAAAGTTACCAATGGCCAATGATATTGATTTGGCTGCAGTAGCTAATATGACTGAGGGATTCATTGGAGCTGATCTTCAAGCTCTCCTCTCAGATGCACAACTTGCAGCAGTTCATGATATTCTGGACAATATCGATACATCTGTGTCAGAGAAAACACCAGTTATTACTGACGCTCTTCTAAAGCTCACTGCATCTAAGACCAGATCATCTGTTTCTGAGGAAGAGAAAAGACGACTCTACAGTATTTATCACCAGTTTCTGGATTCAAAGAGATTCGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCGTGA 3324 0.4182 MEFSVEAVGSISNCFVSLPLPLIQTLQSTASSHLPPILALHLRSPTHPPHSWFVAWSGATSSSSSTIQVSQQFAECVSLPIHSPVQVQVASNVPHASSVSIEPHTEDDWEILELNSEQAEDQILNQVRIVHEGMRFPLRLNGHTVITFHVASVFPKNAVVQLMPGTEVEVAPKTRKRNSDSAGDSHVGSNIREHTAKMLLRLQEPNDLCRTSTHIKGVELHVGLTSVAVVHPETAKRFSFNTLQLVSIVPRVSKENVNNSRTKSNIMKAKGGSAVNEVENGNTDKKEHRQAVVHLLISESVAKGHVMLAKSLRLYLRASLHSWVYLKASDIILEKTMPSISLCPCRFKLVRQENAVEKDGLDDFHSHRNHIDEKLHGKDTSGVFLDTINWSMHNEVVAALTDECNYREEEELEAITSIMGMEFNSLVLGSKTLLHFELSCYKIGSDEKLQLTSSGNCGKAAEMLFLLNFGEEDLHHGKLNAYEVSLGGRLNNVNVEDLKFFERMKLGDPISFHSLDERASADHIRSNVPFLGWMEKTASDVINRMLVLLSSACGLWFGSCNLPLPGHVVIYGPPGSGKTILATNVAISLEKHEDILAHIIFVSCSKLALEKVPVIRQELANHITEAINHAPSVVIFDNLDSIISTPDSEGSQPSMSVAGLTDFLVDIMDEYGEKRRNSCGFGPIAFIATIQSLESIPQSLSSSGRFDFHIKLPAPAASERKAMLKHVIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNAIYEHEGPALLREDFSQAMHDFLPVAMRDITKSVSDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNILLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILAGVFVFAATSRPDLLDAALLRPGRLNRLLFCDFPSWHERLEILTVLSRKLPMANDIDLAAVANMTEGFIGADLQALLSDAQLAAVHDILDNIDTSVSEKTPVITDALLKLTASKTRSSVSEEEKRRLYSIYHQFLDSKRFVAAQSRDAKGKRATLA 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03223 1107 CDD RecA-like_PEX1_r2 825 982 - -
Trre8g03223 1107 MobiDBLite consensus disorder prediction 170 189 - -
Trre8g03223 1107 SUPERFAMILY ADC-like 10 87 IPR009010 -
Trre8g03223 1107 Gene3D - 716 808 - -
Trre8g03223 1107 FunFam Peroxisome biogenesis factor 1 94 173 - -
Trre8g03223 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1073 IPR027417 -
Trre8g03223 1107 ProSitePatterns AAA-protein family signature. 954 972 IPR003960 GO:0005524|GO:0016887
Trre8g03223 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 794 IPR027417 -
Trre8g03223 1107 Gene3D - 94 174 - -
Trre8g03223 1107 FunFam Peroxisome biogenesis protein 1 521 715 - -
Trre8g03223 1107 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Trre8g03223 1107 Pfam Peroxisome biogenesis factor 1, N-terminal 98 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Trre8g03223 1107 Gene3D - 531 715 IPR027417 -
Trre8g03223 1107 FunFam Nuclear valosin-containing protein-like 812 990 - -
Trre8g03223 1107 Pfam AAA+ lid domain 1006 1045 IPR041569 -
Trre8g03223 1107 SMART AAA_5 850 986 IPR003593 GO:0016887
Trre8g03223 1107 SMART AAA_5 564 716 IPR003593 GO:0016887
Trre8g03223 1107 Gene3D - 815 1076 IPR027417 -
Trre8g03223 1107 Pfam ATPase family associated with various cellular activities (AAA) 568 713 IPR003959 GO:0005524|GO:0016887
Trre8g03223 1107 Pfam ATPase family associated with various cellular activities (AAA) 854 981 IPR003959 GO:0005524|GO:0016887
Trre8g03223 1107 Gene3D - 985 1064 - -
Trre8g03223 1107 PANTHER AAA-FAMILY ATPASE 213 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03223 Trre-Chr8 30128056 30140079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03223 565 771 Calmodulin-binding Proteins AT3G56690 28.846 1.24e-11 67.4