Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03220 ATGGATTTGCAAAAGACAGACAGACAATATGCGATGCCGTTTTTGATCAATCATCCACTTCAACCCTTCTCAATTCCCAATTCAATCCACTTCTTTCTCTTCTCTGGGTCTTTCTACACGTTTTCTTCTTCTCTTCAACTGACTTGGCTCAGTTTAATGAAGGAAATGGAACACGAAAAAGCCCCAATCTTGGAAGCAATATCGGTAGAAGAAATTGAGATACCAATTGTCTCAGAAAGACTTGATCTAATTCCAATGACAACAATGTCGTCTCACAACAATTCTGTTTGTCGGTTTTCCAGAAAGGATAAAAATGTTTGTGCATCGAATGAATCGGCCAAGAAACTTTCTTTGCTTATAGTTTTCTATGCTATTGTTATGGTTGTTGAACTTATTGGAGGTTTGAAAGCTCACAGTTTATCTGTTATCAGTGATGCTGCACATTTGCTTTCTGATATAGCCGGATTCGCCATCTCTCTCTTTGCAGTGTGGGCTTCAAGTTGGGAAGCAACACCTCATCAATCCTTTGGATACAATCGTCTCGAGGTTTTGGGCGCTCTTTTATCTGTTCAGCTAATTTGGTTCATATCTGGTTTTTTAATATATGAAGCAGTTGGTAGACTAGTTTATAGAAATGCTAATGTGAATGGAAAGCTCATGTTTGCAATTGCAACATTCGGGTTTGTTCTTAATTGTATCATGGTTTTATGGCTTGGTCATGATCATAGTCATCATCATGGATTTGGAGACTCAAATCATGATCATGATCATGATCATGGTCATAGCCATCACCATGGTCATGGTCAAAGTCATCATCAATGCGGTGGAGACTCAGATCATGACCATGGAACGGAGGAACTACCTAAAATAATTGATGAGGAGAATCTTACAATGCTTTCAAATGGTAAGCGGAATATGAATGTTTTGAACATTAATATTCAAGGAGCCTATTTGCATGTCATGACTGATATGATTCAATCTATCGGAGTGATGATTGCTGGAGGCGTAATATGGGCGAAACCAGAATGGTTTATGGTTGATCTTTTATGTACTCTCATATTCTCTGTACTATCTTTAAGTACTACTCTGCCAATGCTTAGGAATATTTTTGGCATTCTCATGGAGAGAACACCTAGTGAGATTAATATCATTCAGCTGGAAAATGGTCTTAGAAGTATCAAGGGAGTGCAGGAGGTTCATGACTTGCACGTTTGGGCTATAACAGTTGGGAAATTGTTTTTATCATGTCATGTAGTGGCTGAGCCTGGCATCAGTTCCATTCATTTACTTGATAAGATTAAACATTATTGTGAAGATACTTATCAAATACAACATGTAACCATACAAATTGAGTAA 1356 0.3783 MDLQKTDRQYAMPFLINHPLQPFSIPNSIHFFLFSGSFYTFSSSLQLTWLSLMKEMEHEKAPILEAISVEEIEIPIVSERLDLIPMTTMSSHNNSVCRFSRKDKNVCASNESAKKLSLLIVFYAIVMVVELIGGLKAHSLSVISDAAHLLSDIAGFAISLFAVWASSWEATPHQSFGYNRLEVLGALLSVQLIWFISGFLIYEAVGRLVYRNANVNGKLMFAIATFGFVLNCIMVLWLGHDHSHHHGFGDSNHDHDHDHGHSHHHGHGQSHHQCGGDSDHDHGTEELPKIIDEENLTMLSNGKRNMNVLNINIQGAYLHVMTDMIQSIGVMIAGGVIWAKPEWFMVDLLCTLIFSVLSLSTTLPMLRNIFGILMERTPSEINIIQLENGLRSIKGVQEVHDLHVWAITVGKLFLSCHVVAEPGISSIHLLDKIKHYCEDTYQIQHVTIQIE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03220 451 MobiDBLite consensus disorder prediction 270 285 - -
Trre8g03220 451 Pfam Cation efflux family 118 374 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre8g03220 451 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 379 451 IPR036837 -
Trre8g03220 451 Gene3D Cation efflux protein transmembrane domain 112 373 IPR027469 -
Trre8g03220 451 NCBIfam cation diffusion facilitator family transporter 114 451 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Trre8g03220 451 MobiDBLite consensus disorder prediction 249 263 - -
Trre8g03220 451 SUPERFAMILY Cation efflux protein transmembrane domain-like 114 375 IPR027469 -
Trre8g03220 451 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 96 451 - -
Trre8g03220 451 MobiDBLite consensus disorder prediction 249 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03220 Trre-Chr8 30082851 30084664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03220 97 451 Inorganic Solute Cotransporters AT2G46800 45.812 3.99e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03220 K14689 - gmx:100789520 538.11