Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03207 ATGGGAGTTCGTTGCTCTAAACTCTCTCTATGCTGGTGGCCTTCTCATATCAAATCAAACCATCAAAACCTCTCTGATAATAATGATGATGATGGGAACAAGAAACAGAAGGATTCTGGTGTTGGTTTTACTGAGTATAGCTTAGATCAACTTAGAGTTGCTACTGATGGATTTTCATCAGACAACATTGTATCTGAACATGGTGAAAAAGCTCCTAATGTTGTCTACAGAGGTTGTCTTGAAGATGATCGGTTGGTTGCTGTGAAGCGTTTTAACAAATCTGCTTGGCCTGATTCTAGACAGTTTCTGGAGGAAGCAAGAGCAGTGGGAGAGTTAAGGAATGAACGATTAGCTAATTTGGTTGGTTGTTGCTGTGATGGAGAAGAGAGATTGCTTGTTGCTGAGTTCATGCCAAATGAAACTCTCTCTAAACATCTTTTTCATTGGGATGTCCAACCCATGAAATGGGCAATGAGGCTGAGGGTGGCTTTGTATTTAGCACAAGCCTTGGAATACTGCAGTAGTAGAGGAAGGGCATTGTACCATGATCTTAATGCTTATCGAATTTTGTTTGATCAGGAAGGAAACCCTAGACTTTCTTGTTTTGGGCTCATGAAAAACAGTAGAGATGGCAGAAGTTATAGCACAAATTTAGCCTTCACTCCTCCTGAGTACTTGAGGACAGGAAGAATCACCCCTGAAAGTGTAATTTACAGTTTTGGCACCTTATTGCTTGATCTTTTAAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACGAGGCAAGAATTTTCAAATGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGATAGTGAGATTAGCTTCGCGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGCCAAGTCGCTTGTCACTGCTCTGGCTCCTCTTCAGAAAGAAACTTCAGTATTGTCATATGTTTTAATGGGACTACCTGATAGGAGTCTATCATCAAAAGAAACGGTTTTATTAACACCTTTTGGTGAAGCTTGTTCGAGAAGAGATCTCACTGCAATACATGAAATTTTGGAAAAGGTGGGCTACAAGGACGATGAACATGTTGCGAATGAGCTATCCTTTCAAATGTGGACAAATCAAATACAAGATACACTAAATTTCAAGAAGCGCGGTGATTCTGCTTTTCACGCAAGAGACTTCTCTACAGCAATTGACTACTATACTCAATTCATTGACGGTGGGACCATGGTATCGCCAACCGTGTACGCTAGGCGCTGCCTATGCTACATGATGAATGACATGGTACAAGAAGCACTTGGTGACGCCATGCAAGCTCAATCGATATCTCCTACTTGGCCTACTGCATTCTACCTTCAAGCAGTTGCGCTCTCGAGCCTTGGCATGGACAATGATGCACAAGAAAGTCTCAAAGATGGCACAACACTGGAAACTAGAAACCATAGAAATTGA 1482 0.415 MGVRCSKLSLCWWPSHIKSNHQNLSDNNDDDGNKKQKDSGVGFTEYSLDQLRVATDGFSSDNIVSEHGEKAPNVVYRGCLEDDRLVAVKRFNKSAWPDSRQFLEEARAVGELRNERLANLVGCCCDGEERLLVAEFMPNETLSKHLFHWDVQPMKWAMRLRVALYLAQALEYCSSRGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFQMLMDSCLEGHFSNDDGTEIVRLASRCLQYEPRERPNAKSLVTALAPLQKETSVLSYVLMGLPDRSLSSKETVLLTPFGEACSRRDLTAIHEILEKVGYKDDEHVANELSFQMWTNQIQDTLNFKKRGDSAFHARDFSTAIDYYTQFIDGGTMVSPTVYARRCLCYMMNDMVQEALGDAMQAQSISPTWPTAFYLQAVALSSLGMDNDAQESLKDGTTLETRNHRN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03207 493 Gene3D Tetratricopeptide repeat domain 386 493 IPR011990 GO:0005515
Trre8g03207 493 SUPERFAMILY Protein kinase-like (PK-like) 40 317 IPR011009 -
Trre8g03207 493 Gene3D Transferase(Phosphotransferase) domain 1 138 329 - -
Trre8g03207 493 FunFam probable serine/threonine-protein kinase At4g35230 386 493 - -
Trre8g03207 493 FunFam probable serine/threonine-protein kinase At4g35230 33 136 - -
Trre8g03207 493 ProSiteProfiles Protein kinase domain profile. 61 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03207 493 SUPERFAMILY TPR-like 386 487 IPR011990 GO:0005515
Trre8g03207 493 Pfam Protein tyrosine and serine/threonine kinase 75 312 IPR001245 GO:0004672|GO:0006468
Trre8g03207 493 FunFam probable serine/threonine-protein kinase At5g41260 138 329 - -
Trre8g03207 493 Gene3D Phosphorylase Kinase; domain 1 31 136 - -
Trre8g03207 493 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 492 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03207 Trre-Chr8 29758949 29762117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03207 20 313 Glycoside Hydrolase AT3G07070 33.851 4.09e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Trre8g03207 PK_Tyr_Ser-Thr 4.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03207 - - gmx:732542 889.026