Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03204 ATGAGGAAGCCAGAGGTATCTGGAAAAAACAACAATTCTAAGCTTAGAAAAGGGTTGTGGTCACCAGAGGAAGATGATAAACTGATGAACTACATGTTAAACAGTGGACAAGGTTGTTGGAGTGATGTGGCAAGAAATGCTGGATTACAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATTAATTACTTGAGACCTGATCTTAAACGTGGTGCATTCTCACCACAAGAAGAACAACTTATCATACATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCAGCACGTCTACCTGGGAGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCAAACACCTCACCAAACGCAAGCGATGAATCCTCATACGACCCTAACAAAGACCATAACAACATGGGAGGAGGGTTTACAACTTGTTCAACAGTACAAGATCAACATCATATTGATAATAATCATTTTATGCCTATGTTCAATACTTCATCTCCACCATCAATGCAAAACACAGTTTTCAATACCATCATGTCATCATCTAGTGGTGGATTCTTCAACAATAATAGTACTACGGGAACAATCTTCTCACAGAATAATCATGAAAGCAAAAGCTATTATTTGGAAAAAATGTTTGGGAGTGTAAATATTAATGGTGCAGAAGGGGTTGAAATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATAATAGTACTATTACTTCTGAAAATAATACTATAAAAATGGAGAATGCATGCAATATTGGAGAAGATACTAATTACAATATTAGTAGTTATAACTTCGATGATATAAACAACATTGTTAACAACTGCAATGTTGTTAGTAAGAGAATTGATCAAAATATAGCTGATGATGAAGTGGAGAATTTATTTCATGGAGATTTAACTGTTGCAGATTGGAACTTGGAGGATTTGATGAAAGATGTTTCATCTTTTCCCTTTCTTGATTTTTCAAATTGA 1011 0.3482 MRKPEVSGKNNNSKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNASDESSYDPNKDHNNMGGGFTTCSTVQDQHHIDNNHFMPMFNTSSPPSMQNTVFNTIMSSSSGGFFNNNSTTGTIFSQNNHESKSYYLEKMFGSVNINGAEGVEMEIYNVPPLESVNNSTITSENNTIKMENACNIGEDTNYNISSYNFDDINNIVNNCNVVSKRIDQNIADDEVENLFHGDLTVADWNLEDLMKDVSSFPFLDFSN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03204 336 SMART sant 16 66 IPR001005 -
Trre8g03204 336 SMART sant 69 117 IPR001005 -
Trre8g03204 336 CDD SANT 72 112 IPR001005 -
Trre8g03204 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Trre8g03204 336 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Trre8g03204 336 Gene3D - 14 70 - -
Trre8g03204 336 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Trre8g03204 336 FunFam MYB transcription factor 14 70 - -
Trre8g03204 336 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Trre8g03204 336 PANTHER MYB DOMAIN PROTEIN 55 10 259 - -
Trre8g03204 336 CDD SANT 20 64 IPR001005 -
Trre8g03204 336 MobiDBLite consensus disorder prediction 121 145 - -
Trre8g03204 336 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Trre8g03204 336 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Trre8g03204 336 Gene3D - 71 145 - -
Trre8g03204 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Trre8g03204 336 FunFam Transcription factor MYB46 71 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03204 Trre-Chr8 29720027 29723399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03204 1 334 MYB Transcription Factor Family AT3G08500 44.324 2.83e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g03204 Myb_DNA-binding 9.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03204 K09422 - gmx:100785810 390.963