Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03193 ATGGTTTTAATGGATTCTGAGGGAGCTAAAATTCATGCTACTGTTCGAAAAACTCTTATTTACAATTTTAAGGATGACTTGAGAGAGGGAAAGGTTTATGCTTTTGAAAATATGGGAGTTGCAACAAATGGTGGAGCTTATCGGACTACTAACCACCGTTATAAGTTAAATTTCCAGTTCACATCTATTGTTCAAAGTCTTTCTAACCAAGACATTGTTATGTCTCCATTTAACTTTACTCCAACTGCTACTATGGTTGGAGGGTCTTATGACAATGATTATTTAGTTGATGTGATTGGGATGTTGACTGGTGTTGGTAGTGAGTGTGAAGTAACCAACCAAAATGGAACTACCACAAAACTTAATGTTATTGAGTTAGAGGCTGATGGGCATAAGATACAATGCACATTGTTTGGGGCTTATGTTGATGTGCTCAATGGTTTTCTTGGAGCTGGAGAAGTCCAAAATGTTGTTGTCATCATGCAGCTTGCAAAGGGCAAAAATTTTCAAGTTATTGACATGGAAATTGTAGACAAAATTCACATCCAAAACTGCATGAATTGTAGCGTTTTGTTATTTAACCCTACATGTGAAGAAAGTGTTAGTTTCAGGGCAAAAGAAGAAGCTGTTGAAACTCCAACTCCTTTGACTTTAACCCAACTCAATGTTGAGACCCAAGTTATTCCTGTTGATGAGTTTTTGTTCAATACCCCAAGAAGCACTCTGCAGGCTCTTAAAGATGCCACTACTGTTAGAGTGATGGATCACACAGATTCTGCAACCTTTGTCATATTTGATAGAGATGCAAGTTTGCTTTTCAACATGGCTTGTGCTGATATGATTGAGGCACCAGGAGGGGCTGGTGGTGCTGGAGGTTTGCCTCCTCAAATTGCTGATATGGTTGAAAAAACTTGGTTGTTTAAGGTTGAGACCAAACCTACCTTTAATCCTAGATTTGAACAATCCTTTCGTGTTAGAAAGATATGCACGGATGTAGCCATCATCAATCAGTTTAAAGCAAAGTGGGACAATGAAGAGGCAACTTTTATGAAAAATACTAATGAGAATGGTTCTTTAATTACTCTATTGCTGAAAGGGAAAGATGTTTTAGTTGATGGTTCAACAAATATGATATGA 1137 0.3755 MVLMDSEGAKIHATVRKTLIYNFKDDLREGKVYAFENMGVATNGGAYRTTNHRYKLNFQFTSIVQSLSNQDIVMSPFNFTPTATMVGGSYDNDYLVDVIGMLTGVGSECEVTNQNGTTTKLNVIELEADGHKIQCTLFGAYVDVLNGFLGAGEVQNVVVIMQLAKGKNFQVIDMEIVDKIHIQNCMNCSVLLFNPTCEESVSFRAKEEAVETPTPLTLTQLNVETQVIPVDEFLFNTPRSTLQALKDATTVRVMDHTDSATFVIFDRDASLLFNMACADMIEAPGGAGGAGGLPPQIADMVEKTWLFKVETKPTFNPRFEQSFRVRKICTDVAIINQFKAKWDNEEATFMKNTNENGSLITLLLKGKDVLVDGSTNMI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03193 378 SUPERFAMILY Nucleic acid-binding proteins 250 334 IPR012340 -
Trre8g03193 378 Pfam Domain of unknown function DUF223 1 95 IPR003871 -
Trre8g03193 378 CDD RPA1_DBD_A_like 1 64 - -
Trre8g03193 378 Gene3D - 1 69 IPR012340 -
Trre8g03193 378 SUPERFAMILY Nucleic acid-binding proteins 1 69 IPR012340 -
Trre8g03193 378 Gene3D - 70 212 IPR012340 -
Trre8g03193 378 SUPERFAMILY Nucleic acid-binding proteins 77 204 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03193 Trre-Chr8 29527370 29529313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03193 3 143 Core DNA Replication Machinery Family AT2G06510 24.306 5.21e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03193 - - tpra:123915045 448.743