Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03188 ATGGAACATGAAAAGACTGAATGTCAAGCTCCCCCGGAAGGTCCTATATTGTGCATCAACAGCTGTGGATTTTTCGGTAGTGCAGCTACCTTGAACATGTGTTCCAAGTGCCACAAAGACATGATGCTGAAACAAGAGCAGGCCCAGCTTGCAGCATCATCCCTTGGCAATATTATGAATGGGACTACAAGCTACACTGAAAAAGAACCCGTTGTTGCTGCTAGCGTGGATATCCCAGTCATTTCTGTGGAACCTAAAAAAACTATCATTAAGCCATTTTCATTTGGCTCGACATCAGAGGATAGTGGTGATGCAAAGCCAAAGGATGGACCGAAACGTTGCAGCAACTGCAATAAGCGAGTTGGTTTGACAGGGTTCAATTGTCGATGTGGTAATGTTTTCTGTGCTGTACATCGCTACTCAGACAAGCATGATTGCCCGTTTGATTACCGCACTGCTGCACAAAATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGACAAGATCTAA 522 0.4483 MEHEKTECQAPPEGPILCINSCGFFGSAATLNMCSKCHKDMMLKQEQAQLAASSLGNIMNGTTSYTEKEPVVAASVDIPVISVEPKKTIIKPFSFGSTSEDSGDAKPKDGPKRCSNCNKRVGLTGFNCRCGNVFCAVHRYSDKHDCPFDYRTAAQNAIAKANPVVKAEKLDKI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03188 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
Trre8g03188 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 173 - -
Trre8g03188 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Trre8g03188 173 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Trre8g03188 173 FunFam Zinc finger AN1-type containing 6 91 169 - -
Trre8g03188 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Trre8g03188 173 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Trre8g03188 173 Gene3D - 95 169 IPR035896 -
Trre8g03188 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
Trre8g03188 173 SUPERFAMILY AN1-like Zinc finger 100 168 IPR035896 -
Trre8g03188 173 Gene3D - 1 60 - -
Trre8g03188 173 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03188 Trre-Chr8 29425982 29426503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03188 4 173 C2H2 Transcription Factor Family AT3G52800 40.000 1.23e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03188 - - mtr:11414450 318.161