Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03186 ATGGAACCAGCTCCACCATCATTGGAGCTAGACCTTGACAACCTTAAAGCACTCAAAATCCTAGGCAAAGGTGCCATGGGAACTGTCTTCCTTATCCACCACACCACCGCCACCGCTACCACTACAGCTGCCACCGCATTCGCGCTCAAAGTCGTCGACAAAACCTCGGTCCATGCCAAACTAGACGCCGAACGCCGCGCACGTTGGGAAATCCAAGTCCTCTCAACTCTCTCCCATCCTTTCCTCCCTTCCATTCTTGGAACATACGAGTCCCCACAATTCTTAGCATGGGCCCTACCTTATTGTCCTGGTGGTGACCTTAATGTCCTTCGTTACCACCAAAACGACCGCGTTTTCTCTCCTTGTGTTATCCGTTTCTATATAGCTGAAATCCTCTGCGCTCTCGACCACCTTCATTCCATGGGCATCGCTTACCGTGACTTAAAACCCGAAAATGTCCTCATTCAACATTCCGGCCACGTCACGTTAACCGATTTTGATCTCTCTCGAAAACTTAACCCAAAAACCGTTACAAATAATAATAAAACCGTCGATTCTAATTTACCTTCACATGATAGAAACCTTCCAGAATCTTCTAGAAAACACCGACGGAATTTCTCACGGTGGATCCCTCTATCATCGGAAACTTCTCATCAAATTCAACATAAGATGAATGGTTTGAATTTGAAGAAAGCGAAATCAGCACGAGTTAGTCCGGTGAGTCGACGGAAAATGAGTTTCTCAAATGGTGAACGATCTAACTCGTTTGTTGGAACGGAGGAGTATGTTTCACCGGAGGTTGTTCGCGGTGACGGTCATGAATTTGCTGTTGATTGGTGGGCGTTAGGGATTCTTATGTACGAAATGATGTACGGTACGACGCCGTTTAAGGGGAAGAATCGGAAGGAAACGTTTAAAAATGTTTTGATGAAGTCGCCGGAGTTCGTTGGAAAACGATCGGAGTTGACGGATTTGATAGAGAAGTTGTTGGAGAAGGATCCAACGAAGAGATTGGGTTATTCGCGTGGCGCTGTTGATATTAAAGAGCATGGGTTTTTTAGAGGGGTTAATTGGGAAATGTTGACGGAGGTGGTACGGCCGCCGTTTATTCCGGCAAGAGATGACGGTCACGGGGAATTTCCGTTAGAGAAGTTTTCCAATGGCGGTGTTGATATTAAGGATTATTTTCAGCGGTTGAAAACGCCACCGTCGTTGCATCCTTCGCCGTTAACGTCGCCGTCTCCCAATAAGTTTAAAAAGAAAAGTGTTTCGTTAACGGAATTCTGA 1287 0.4608 MEPAPPSLELDLDNLKALKILGKGAMGTVFLIHHTTATATTTAATAFALKVVDKTSVHAKLDAERRARWEIQVLSTLSHPFLPSILGTYESPQFLAWALPYCPGGDLNVLRYHQNDRVFSPCVIRFYIAEILCALDHLHSMGIAYRDLKPENVLIQHSGHVTLTDFDLSRKLNPKTVTNNNKTVDSNLPSHDRNLPESSRKHRRNFSRWIPLSSETSHQIQHKMNGLNLKKAKSARVSPVSRRKMSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILMYEMMYGTTPFKGKNRKETFKNVLMKSPEFVGKRSELTDLIEKLLEKDPTKRLGYSRGAVDIKEHGFFRGVNWEMLTEVVRPPFIPARDDGHGEFPLEKFSNGGVDIKDYFQRLKTPPSLHPSPLTSPSPNKFKKKSVSLTEF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03186 428 ProSiteProfiles Protein kinase domain profile. 15 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03186 428 Gene3D Transferase(Phosphotransferase) domain 1 106 179 - -
Trre8g03186 428 Gene3D Transferase(Phosphotransferase) domain 1 248 372 - -
Trre8g03186 428 ProSiteProfiles AGC-kinase C-terminal domain profile. 354 428 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre8g03186 428 FunFam Serine/threonine-protein kinase UCNL 15 105 - -
Trre8g03186 428 MobiDBLite consensus disorder prediction 400 428 - -
Trre8g03186 428 PANTHER FLIPPASE KINASE 1-RELATED 10 373 - -
Trre8g03186 428 MobiDBLite consensus disorder prediction 411 428 - -
Trre8g03186 428 MobiDBLite consensus disorder prediction 177 200 - -
Trre8g03186 428 SUPERFAMILY Protein kinase-like (PK-like) 12 412 IPR011009 -
Trre8g03186 428 Pfam Protein kinase domain 17 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03186 428 Pfam Protein kinase domain 248 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03186 428 SMART serkin_6 15 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03186 428 FunFam Serine/threonine-protein kinase OXI1 251 372 - -
Trre8g03186 428 MobiDBLite consensus disorder prediction 231 252 - -
Trre8g03186 428 ProSitePatterns Protein kinases ATP-binding region signature. 21 50 IPR017441 GO:0005524
Trre8g03186 428 MobiDBLite consensus disorder prediction 177 193 - -
Trre8g03186 428 Gene3D Phosphorylase Kinase; domain 1 15 105 - -
Trre8g03186 428 FunFam Serine/threonine-protein kinase OXI1 106 174 - -
Trre8g03186 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03186 Trre-Chr8 29327448 29328734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03186 10 413 AGC Kinase Gene Family AT3G20830 59.756 1.80e-164 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre8g03186 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03186 - - gmx:100785281 593.964