Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03178 ATGAACGATATTGACTCCGATAGTAGTGGTGGTGGTTATCATCCACAGCCACCACCGCATCAAGAACTTGTGACTCAGTATAAGGCTGCTCTTGCTAAGCTTACTTTCAACTCGAAACTTATAATTACCAATTTGGCTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGTTGTTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGACAGTATTGTTAAGAATATTGGGTGAGATTTTACATAAAATACTTTGCTGCCAGACTACCCGAGGTATATTGCAATACATACAGACAGGCAACGCCTTCAGTAGTCCAACAGGGACCTCTCTAGCAGAAAAGTACATCGACAACCTTAAGTTCTAA 381 0.4042 MNDIDSDSSGGGYHPQPPPHQELVTQYKAALAKLTFNSKLIITNLAIIAGENLSAAKSIAGVVCANILEVPSDQKTVLLRILGEILHKILCCQTTRGILQYIQTGNAFSSPTGTSLAEKYIDNLKF 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03178 126 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 22 75 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre8g03178 126 Gene3D - 16 123 IPR008942 -
Trre8g03178 126 ProSiteProfiles CID domain profile. 19 126 IPR006569 -
Trre8g03178 126 SUPERFAMILY ENTH/VHS domain 19 88 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03178 Trre-Chr8 29168954 29170632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03178 7 89 C2H2 Transcription Factor Family AT4G04885 45.783 3.51e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03178 K14400 - gmx:100788958 117.857