Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03177 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAAAATCATCATCAACAACAGATGAATTCAGGGTTAACAAGGTTTAAATCTGCACCAAGTTCTTATTTTTCGAATATTATTGATAAAGAGTTCTATGAGCATCTTTTCAATAGACCTTCAAGTCCTGAAACAGAACGAGTTTTTGCACGGTTTATGAATAGTCTTAGTGGTAGTGGAAGTGGTGGTGCTGGTGGTGGTGGTGATGCTGAAAGTGTTGCTGTTTCTGCTTCTGTTCCTGTTGTAGATGATTCACTGACTCAGAATCTATCAACTGTTCAACAACAACTTCCTATAGTTAAGGAAGAGATTGATCAACAATCTCAAACTATGTCATCAATGAATAATAATAATAATGAAACTATGGATCTTCAACAGCTTCAAAGAACACAAAGTAATATGAATAGTTATGGTTCTTCTGTTCCTCAAAATTTTTATCAAAGTTCTGGAAGACCACCTTTGCCAAATCAAATGAAAACTGGTAGAGGAAATTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACTGGATTTGCAGCTATGAGAGGCATAGGATCTATTGGAGCTGCTAATAGTACTAGCAAAGAAGCAAAATTTTCTTCTGCAGTAAGGTTAAAGAATGCTTCTAACTACTCCTCAGTGTTAGGAGCTGAAATTGGGAATAGTAGCATTCCACAAACTAATCCTGAACCTGAAGGTTTTGCTGAAAGCCGGGGTAACGATTTTATCCCGGGTTTCCCTTTAGGTACTACATGGGAAGATACTGCAATCATATCTGACAATATTACCGGTCTAAAAAGATACAGAGATGATGATGATGTAAAACCATTTTCTGCAGGTTTAAATCCAGCTGAAACTAAGAATGAAACAGAAGGCCAGCCTTCTACTGCTCCTTTGGCTCATCAGATGAGTTTGCCGAATACTACGGCAGAGTTAGCAGCCATTGAGAAGTTTTTGCAGTTCTCGGACTCTGTTCCGTGCAAAATTCGCGCCAAGCGTGGCTGCGCCACTCACCCAAGAAGCATTGCAGAAAGGGTAAGAAGAACTAAAATTAGTGAACGAATGAGGAAACTACAAGATCTTGTGCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGATTTGGCTGTTGAGTACATTAAAGACCTACAAAATCAAGTTGAGACTCTTTCGGACAGTCGAGCTAAGTGCACGTGTCTACACAAGCAATAA 1290 0.386 MESDLQQHPTMFLDHQNHHQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGAGGGGDAESVAVSASVPVVDDSLTQNLSTVQQQLPIVKEEIDQQSQTMSSMNNNNNETMDLQQLQRTQSNMNSYGSSVPQNFYQSSGRPPLPNQMKTGRGNCSNLIRHGSSPAGLFSNINIETGFAAMRGIGSIGAANSTSKEAKFSSAVRLKNASNYSSVLGAEIGNSSIPQTNPEPEGFAESRGNDFIPGFPLGTTWEDTAIISDNITGLKRYRDDDDVKPFSAGLNPAETKNETEGQPSTAPLAHQMSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVETLSDSRAKCTCLHKQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03177 429 MobiDBLite consensus disorder prediction 307 321 - -
Trre8g03177 429 Gene3D - 360 428 IPR036638 GO:0046983
Trre8g03177 429 FunFam Transcription factor bHLH130 family 360 428 - -
Trre8g03177 429 SMART finulus 365 415 IPR011598 GO:0046983
Trre8g03177 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Trre8g03177 429 Pfam Helix-loop-helix DNA-binding domain 364 410 IPR011598 GO:0046983
Trre8g03177 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 422 IPR036638 GO:0046983
Trre8g03177 429 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 425 - -
Trre8g03177 429 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03177 Trre-Chr8 29155415 29157848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03177 1 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.395 2.52e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g03177 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03177 - - gmx:100803833 540.421