Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03170 ATGTCAAAAACCACCGCATCCGGCGTCGACTCTCCCTTCAACGACCTCGATACACCAACACTAGACATAGAGTCTCCCACGCTACTCCACTCCATTTCAGAGCACGGAGGATACGCCTACGTCAGAATGGCATCACTGGCTGCCGCCGGCGACATTCGAGCAGCGGAAGCAGTTAGAGAGATGGCGTGGGAGCAACTTCACTCTGGACCTTGGCACTCGGTGTTGCCGGTGTGGCGTGACGCTTACTCGATGGCGTGTCTTCATGTGGCGAAGCATCACTATGGAAACGGTGAGTTTAGGGAAGCGCTTAAGGCTTTGGATATGGGGATTATCATGGGAGGGAATCTTCTTAGAAAGGATTTGGATTCTGCTATTCGTAAGGTTTCTGAAAAAGCTAGGAATGTTAGGGTTTCTGATGGAAACTACCAAGATTTTGGTAACTCTGAGCAACGACTTGTTGATCATGATTTTGATGTGTCTAAGGTGCTCCAATTTTTACCTGTTAAGTCCCTTGCTTCTAAGCTTGTGGTGAAGAGGTCCGCCCTGTCGCTGGAGAAGTTCCTGAAAGATCATTACCTGTCTGGCACCCCAGTTATCATCAGTGATTGTATGGCACACTGGCCAGCCAAGAAAAACTGGAATAATATAGATTACTTGCTCAGAGTTGCTGGTGACCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCAGATTGGAAGCAAGAGCTAGTTACATTTTCGGAGTTTCTTGAGCGGATAAGGTCCCATAGCTGTTCTCCTGTTGGTCCGACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAGAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGAGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTAGCACAGGTTGTTGGGAAAAAATACATTCGGCTTTATCCAGCATCCGTGTCTGAGGAACTTTTCCCCTACTCGGAAACCATGCTTAGAAATTCCAGCCAGGTTGATTTAGACGATGTAGACGAAAGGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATACATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTAACTACCAGTATGTCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCTCCATCCTAA 1254 0.4593 MSKTTASGVDSPFNDLDTPTLDIESPTLLHSISEHGGYAYVRMASLAAAGDIRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYGNGEFREALKALDMGIIMGGNLLRKDLDSAIRKVSEKARNVRVSDGNYQDFGNSEQRLVDHDFDVSKVLQFLPVKSLASKLVVKRSALSLEKFLKDHYLSGTPVIISDCMAHWPAKKNWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELVTFSEFLERIRSHSCSPVGPTYLAQHPLFDQINELRRDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASVSEELFPYSETMLRNSSQVDLDDVDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSMSVSFWWSEGESSSPS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03170 417 FunFam lysine-specific demethylase JMJ30 175 408 - -
Trre8g03170 417 Pfam Cupin-like domain 186 410 IPR041667 -
Trre8g03170 417 SMART cupin_9 266 414 IPR003347 -
Trre8g03170 417 Gene3D Cupin 175 409 - -
Trre8g03170 417 SUPERFAMILY Clavaminate synthase-like 180 409 - -
Trre8g03170 417 ProSiteProfiles JmjC domain profile. 260 417 IPR003347 -
Trre8g03170 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03170 Trre-Chr8 28931292 28936019 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03170 170 408 Acyl Lipid Metabolism Gene Families AT3G45880 25.676 4.58e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre8g03170 Cupin_8 1.3e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03170 K24444 - gmx:100813075 713.761