Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03167 ATGGCTATCAATCATCATTCAAATAAAGATTTCAAAGTAACAGATGATGAACTTCTTCAATCATTCCTCTACAACAAAATTCACAACAAACCTTTGCCCAATCATATGACCATTCTCGAATACGATTTGTTCGGTACCACAAAGAATCCTTGTGACATTTGGGAAGAGTTTGCAGCTTCACACTTATATAGTGGAAAAGACTTATATTTCTTCAGTACCTTAAAGAAGAAATCGGCCACTAGCACACGCATGGATCGTACTATTGGAACTGGTTCATGGGAAGCTGAAGATAGCGGAAAAAGTATATTCGCTAAAAATACAAACCAACTCCTCGGTATAAAAAAACGCTATCGCTTTGAAAAGAGTAAGACTAAGACTGATCCAGATGGTGGATGGATCTTACACGAATATCGCCTTGACCAATCTTTGCTAAGCAATCCTTCGGCCAAAAACTATGTTCTATGCAGATTTAGAAAGAATTTGAAGCTGGATATACAAAATACAGAAACAACAATAAATCAGCAATCCAATTCACACGAAAATTCAAGAGCCAAGAATGTTGGACAAGATGAACAAAGAAAAACCGTTGTTCCTCCACGTGCGGCAACAACCACCATATCTGGCAGTAATACTTTTTTGAGTAAATATACAATTTATGTACCAATAGATGAATCAAATGGTGAACACAATAAGACAAATGTGGTTAATGAAGAATCTTCATACAAAGAAGAAGGTATGGAAAATATTTGGCCAGAAAACACCATCGTTCTTGCACTCGAGGCTACGCCCAAATCTGAGCACAATAGTGAATTTAACAAAGAAGGTGTTGAATGCATTATGAACAAAGAATATGATGGTGATATCATTATAAACACAGAAGAAGATGATAGCAAAGAAGAAGAGGGTGATGACACTATGTCTTGGCCTAAGTATTTTTCACAAGAGTTAATAAACAATAATGAAGCTTGTCTGATGGGAGAGGAAGATGTTATAATGATTTCCAATAATTTTAATAAAGAATTGTTGGAAAGTATGATCAATATTAAGTAA 1050 0.3524 MAINHHSNKDFKVTDDELLQSFLYNKIHNKPLPNHMTILEYDLFGTTKNPCDIWEEFAASHLYSGKDLYFFSTLKKKSATSTRMDRTIGTGSWEAEDSGKSIFAKNTNQLLGIKKRYRFEKSKTKTDPDGGWILHEYRLDQSLLSNPSAKNYVLCRFRKNLKLDIQNTETTINQQSNSHENSRAKNVGQDEQRKTVVPPRAATTTISGSNTFLSKYTIYVPIDESNGEHNKTNVVNEESSYKEEGMENIWPENTIVLALEATPKSEHNSEFNKEGVECIMNKEYDGDIIINTEEDDSKEEEGDDTMSWPKYFSQELINNNEACLMGEEDVIMISNNFNKELLESMINIK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03167 349 SUPERFAMILY NAC domain 11 158 IPR036093 GO:0003677|GO:0006355
Trre8g03167 349 Gene3D NAC domain 14 163 IPR036093 GO:0003677|GO:0006355
Trre8g03167 349 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Trre8g03167 349 Coils Coil 158 178 - -
Trre8g03167 349 PANTHER NAC TRANSCRIPTION FACTOR 56 11 207 - -
Trre8g03167 349 ProSiteProfiles NAC domain profile. 5 160 IPR003441 GO:0003677|GO:0006355
Trre8g03167 349 MobiDBLite consensus disorder prediction 170 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03167 Trre-Chr8 28903542 28907267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03167 11 181 NAC Transcription Factor Family AT5G62380 32.000 5.73e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g03167 NAM 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03167 - - tpra:123896066 350.517