Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03162 ATGAATACAGAAAGATCAATAGAAGACCAATTCTCCAAGCTACATCCTTTTTTGCCAGAAAACACCAGAATCGGAATAGTTGGTGCCGGTCCTAGTGGCTTATCAGCAGCTTATGCATTAACCAGACTTGGTTATAAGAATGTTACAGTTTTGGAGAAACATCACACAGTTGGTGGCATGTGTGAATCAGTAGAAATTGAAGGAAAAGTTTATGACTTAGGAGGACAAGTTCTAGCTGCAAGTAGTGCTCCGGTCATCTTTCACTTGGCGAAAGAGACAGGCTCTGCATTAGAAGAAATGGATTCCCATAAGCTTGCTGTTGTTGACCCTTCATCAGGAGAATATCAAGATATTAAAGTTGCCGATGATTATGTATCTGTTATGTCACTTACATTGCAAATACAAGAAAAAGTGAAGAATTGTGGTCGTATCGGTATCCATGCTGTAAGCGACATTGCTTCAGACTTAACTCCAGAGTATCTAAAGTGTCATGGACTCAAATCCATTCCTAAATCTGTAGCTTATGGTTACACTGCTTCAGGATATGGATTTGTTCAAGACATGCCTTATGCCTACCTTCATGAATTTACTAGAACGTCAATGGCTGGTAAAATTCGACGATTTAAAGGTGGATATACAAGTCTTTGGCAGAAGATTGCTGAATCACTTCCTTTGAGACTTCTCTGTAACACTGAAGTATTGGCAATCAATCGGAACTCAGATAGTGTCATGGTTGATATCAAGAGATTAAACGTAGTTGAAACATTGGAATTTGATAAGATCATAATTTCTGGTTCGTTTCCATTAAAATATAGAAGAATTTACCGATCACCTTCGACTTGCATAGAAAGCGAAAAAGGAGTAATGGATGCAAGTGATCTTGAAAAGGATTTATTCAGCAAAGTCGAGACAAATGACTACTATACTACTGTTTTAAAGATCAAAGGACATGAACATTTTCCTATTGGATTTTATTATTTTAATAAATATATGGAAGATCCCAGCACAATTGGAAATCCAGTTGCAATGCAGAAATTTTATGCCGACAGTAATATATTCTTGTTCTGGTCCTACGGAAACTCTGTTGATATTAAGGGACCAACTGTCAAGGAGTTTGCAGTGAAGACGGTAGAAGCCATGGGAGGAGAAGTCGAGAGTTTCATTCTTCAACGTTGCTTTAAGTATTTTCCTCATGTTAGCATCCAAGATATGAAAGATGGATTCTATGAAAAGTTGGAATCAGAACTTCAAGGTTCAAGGAATACTTATTATGTTGGTGGGCTTATGGCATTTGAGCTTACAGAGAGGAACTCATCTTATGCAATGGCTCTAATTTGCAAGAACTTTGCTAATAGCAATGAATTGCCAACATTTCCTTATACTAAGAATTTGTTTCCCTTGCAAACGGAGAGCCAAAAGAAGAACCCTAAAGAATTAGATGAATTTCCAGAAGTGCAATTTCCTAATTTGCCTACTCTGAATAGCTACTTAAAGTACTGGGGGACTCATCCAATCACTCAAAATAGGACTCTTTACACATGGATTAATGAAGAAGGGAATCCGGTGTGCCACAGGACCTACGGAGAACAACATTTTTATTCTTCTTGCATTGCTCATAAGCTCTTGACAAGCCAAAAGCCGGTTATCAAGCCTGGTGACAGAGTTCTCCTGGTATATGTCCCCGGTTTAGATTTTATCGATGCCTTCTTTGGATGCCTAAGAGCTAAAGTCTTACCCGTTCCAATTATTCCCCCGGATCCCATGCAAAGAAGTGGACAAGCACTCATGAAAATTGAAAACATTGCCAAGTCATGCGGCATTGTGGCAATTTTGTCAACAATAGCTTATCACTCAGCCGTCCGTGCAGGTTCATTGAAAAATTTAATTTCACTAACACGACAAAATGGGAAGTCATCCGCTCGGTGGCCGAATCTTCCATGGTTGCACACTGATACCTGGGTCAAGAATTCCAAGAACATTGTTGTGGAGCATCTTGATGATCAATGTGAACCACAACCTGATGATACATGTTTCTTGCAATTTACCTCAGGATCAACTGGTGATGCTAAAGGTGTCATGATCTCTCATGGTGGACTAATTCACAATGTGAAGTTGATGCAAAGAAGATACAAAAGTACCTCGAAGACTAAACTAGTAAGTTGGCTTCCTCAGTATCATGACATGGGGCTGATCGGGGGACTTTTCACATCGCTTGTTAGTGGTGGAACAGCAATTTTATTTTCACCAATGACGTTTATCAAGAAACCACTCTTATGGCTTGAAATCATCAGCAAGTATCAAGCAACTCATAGTGCCGGTCCTAACTTCGCCTTCGAGTTACTGATTCGAAGATTGGAGGCCGACAAGGATAAGATTCAGAATTTGGACCTTTCATCCTTGGTTTTTCTTATGGTTGCTGCTGAACCGGTGAGACAGAAGACACTGAAAAGATTCATTGAGCTAACCACTCCTCTCGGTTTATCTCAAAAGGTGATGGCTCCAGGATACGGATTGGCAGAAAATTGCGTGTTTGTCAGCTGTGCATTTGGAGAAGGTGAGCCTATCATTGTTGATTGGCAGGGAAGAGTTTGTTGTGGGTATGTTCGTCCAGAGGATACAGATATTGACATTAGAATAGTTGATCCAGACACTTGCGAAGAGCTTCACGTAGATGGAAAGGAGGGAGAAATCTGGATTAGAAGTCGAAGTGCAGGAGTAGGATACTGGGGAAGGGAAGAATTGAGTCAGAAAACATTCATGAATGAACTTGCTAATCGTCCCGGAAGTAACTACACGAGAACCGGAGACTTGGGACGAATAATAGATCAGAAGCTATTCATCACTGGAAGAATCAAGGATCTTATCATTGTTGCTGGAAGAAACATATACTCTTCTGATGTGGAAAAGACGATTGAAACTTCATCTGAATTTCTTCGTCCCGGATGCTGTGCTGTCATTGGTGTCCCTGAGGAAATTCTATCAGCAAAGGGGATTTCCATTCCTGATGGTTCTGATCAGGTTGCCTTGGTTGTCATTGCAGAAGTAAGGGATGGTAAACCAGTTAGCAAAGATGTGATTGAGAACATTAAGGCGCGTGTGGCAGAAGAACATGGAGTCAGTCTTGCTTCTGTCAAGTTGATCAAAGCTAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAATGTATCAAACAATTTAAAGATGAGACCCTTAACTTGGTACCTTTAGGTACAAAACCTATGTTGACAAAGAAATCATTGGTATGGTCATTTACTACAACGGCCACATGCAGAGAAGAAAAACCGGTCCGACTCCAGTTAGTAAAACGTTCACCTGTACCTAGTAAAAGGATCAATAAAAGCGACATCATAGAGTTTTTGAAAGTGCTTATTTCTGATCAGACTGGAGTACCAATCAACAACGTCTCAGTCACCGACAACCTGACATCATATGGAATTGACTCAATTGGGGTGGTTAAAGCAACTCAAAAACTCTCAGATTTTCTAGGCACACCAGTTGCAGCAATAGATGTTTTCACTGCATCATGCATTCTAGAATTGGCTACCTTCTCTGAGGATCTTCTATCAAAGACCCAGCCTCAGCTAGTGAGAAGTGTGCCGATACCTACTAAAAGGGTCAGTAAAAATGACATTGTAGAGTTCTTGAAAGGGCTTATTTCCGAACAGACTGGAGTCGCAATCAACAAGATTTCAGTCACAGACAACCTGACATCCTATGGAATCGACTCAGTTGGTGTGGTTAATGCAACTCAAAAACTCTCAGATTTCCTTGGAACACCAGTTGCAGCTATTGATGTTTTCACTGCATCCTGCATTACAGATTTGGCTAACTTTTCTGAGGATCTTCTGTCAAAGACTCAGCCTCAGCTTCCAAGCAATCCGATCAATGTTACAGAGGCGGATATTGATTGTACTGTATCGGCTGTTGAGGTATCAAAGTCTCGCCAATGGGGTATCCGCTTACTTCAATTCCTGTTAGTTAATATTAATTACTACCTATTGTGA 4035 0.4037 MNTERSIEDQFSKLHPFLPENTRIGIVGAGPSGLSAAYALTRLGYKNVTVLEKHHTVGGMCESVEIEGKVYDLGGQVLAASSAPVIFHLAKETGSALEEMDSHKLAVVDPSSGEYQDIKVADDYVSVMSLTLQIQEKVKNCGRIGIHAVSDIASDLTPEYLKCHGLKSIPKSVAYGYTASGYGFVQDMPYAYLHEFTRTSMAGKIRRFKGGYTSLWQKIAESLPLRLLCNTEVLAINRNSDSVMVDIKRLNVVETLEFDKIIISGSFPLKYRRIYRSPSTCIESEKGVMDASDLEKDLFSKVETNDYYTTVLKIKGHEHFPIGFYYFNKYMEDPSTIGNPVAMQKFYADSNIFLFWSYGNSVDIKGPTVKEFAVKTVEAMGGEVESFILQRCFKYFPHVSIQDMKDGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALICKNFANSNELPTFPYTKNLFPLQTESQKKNPKELDEFPEVQFPNLPTLNSYLKYWGTHPITQNRTLYTWINEEGNPVCHRTYGEQHFYSSCIAHKLLTSQKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPIIPPDPMQRSGQALMKIENIAKSCGIVAILSTIAYHSAVRAGSLKNLISLTRQNGKSSARWPNLPWLHTDTWVKNSKNIVVEHLDDQCEPQPDDTCFLQFTSGSTGDAKGVMISHGGLIHNVKLMQRRYKSTSKTKLVSWLPQYHDMGLIGGLFTSLVSGGTAILFSPMTFIKKPLLWLEIISKYQATHSAGPNFAFELLIRRLEADKDKIQNLDLSSLVFLMVAAEPVRQKTLKRFIELTTPLGLSQKVMAPGYGLAENCVFVSCAFGEGEPIIVDWQGRVCCGYVRPEDTDIDIRIVDPDTCEELHVDGKEGEIWIRSRSAGVGYWGREELSQKTFMNELANRPGSNYTRTGDLGRIIDQKLFITGRIKDLIIVAGRNIYSSDVEKTIETSSEFLRPGCCAVIGVPEEILSAKGISIPDGSDQVALVVIAEVRDGKPVSKDVIENIKARVAEEHGVSLASVKLIKARTISKTTSGKIKRFECIKQFKDETLNLVPLGTKPMLTKKSLVWSFTTTATCREEKPVRLQLVKRSPVPSKRINKSDIIEFLKVLISDQTGVPINNVSVTDNLTSYGIDSIGVVKATQKLSDFLGTPVAAIDVFTASCILELATFSEDLLSKTQPQLVRSVPIPTKRVSKNDIVEFLKGLISEQTGVAINKISVTDNLTSYGIDSVGVVNATQKLSDFLGTPVAAIDVFTASCITDLANFSEDLLSKTQPQLPSNPINVTEADIDCTVSAVEVSKSRQWGIRLLQFLLVNINYYLL 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03162 1344 SUPERFAMILY Acetyl-CoA synthetase-like 492 1076 - -
Trre8g03162 1344 Gene3D - 952 1078 IPR045851 -
Trre8g03162 1344 ProSiteProfiles Carrier protein (CP) domain profile. 1219 1293 IPR009081 -
Trre8g03162 1344 SUPERFAMILY ACP-like 1122 1207 IPR036736 -
Trre8g03162 1344 Gene3D - 1116 1196 IPR036736 -
Trre8g03162 1344 Gene3D - 1211 1291 IPR036736 -
Trre8g03162 1344 CDD FAAL 508 1071 IPR040097 GO:0008610
Trre8g03162 1344 Pfam NAD(P)-binding Rossmann-like domain 26 92 - -
Trre8g03162 1344 ProSiteProfiles Carrier protein (CP) domain profile. 1124 1198 IPR009081 -
Trre8g03162 1344 ProSitePatterns Phosphopantetheine attachment site. 1153 1168 IPR006162 -
Trre8g03162 1344 Pfam AMP-binding enzyme 522 957 IPR000873 -
Trre8g03162 1344 Gene3D - 23 445 IPR036188 -
Trre8g03162 1344 PRINTS Adrenodoxin reductase family signature 47 60 - -
Trre8g03162 1344 PRINTS Adrenodoxin reductase family signature 23 45 - -
Trre8g03162 1344 Gene3D - 478 951 IPR042099 -
Trre8g03162 1344 Gene3D - 94 202 - -
Trre8g03162 1344 SUPERFAMILY FAD/NAD(P)-binding domain 20 272 IPR036188 -
Trre8g03162 1344 ProSitePatterns Putative AMP-binding domain signature. 679 690 IPR020845 -
Trre8g03162 1344 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 132 1215 - -
Trre8g03162 1344 SMART Phosphopantetheine attachment site 1127 1198 IPR020806 GO:0031177
Trre8g03162 1344 SMART Phosphopantetheine attachment site 1222 1293 IPR020806 GO:0031177
Trre8g03162 1344 Gene3D - 302 395 - -
Trre8g03162 1344 Pfam Phosphopantetheine attachment site 1224 1288 IPR009081 -
Trre8g03162 1344 Pfam Phosphopantetheine attachment site 1130 1192 IPR009081 -
Trre8g03162 1344 SUPERFAMILY ACP-like 1216 1299 IPR036736 -
Trre8g03162 1344 ProSitePatterns Phosphopantetheine attachment site. 1248 1263 IPR006162 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03162 Trre-Chr8 28878519 28883307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03162 644 1067 Monolignol Biosynthesis Gene Families AT1G20480 26.292 2.10e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03162 - - tpra:123914735 2550.78