Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03108 ATGGACTCCGAGGATGATATGCATGATGCTAACGATATGGAGTCTCTTGATGACGATGATGATTTCTACAGTGGTGATACGGATGGTGCTGGCATGGATTATTACAGTGATTATGATGATGATGATGCTGGTGATTACTTCGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAACTTTACCATCTTGAAGGAATCCGATATCCGAATGAGACAGGAAGATGACATCAATACAGTAGCAGCTGTTCTTTCTGTATCAAAAGTTATTGCAAGCATATTGCTTCGTCACCACAATTGGAGCGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCAAGTCCGAAAAGCGGTTGGCTTGTTGGATGAGCCAGTTGTCCTGCATCCTAATGCTAGAGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGTTCTGGGATTGAAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATATATCAGTACGTCCATTAATGACGGTCCTGGATGTTTGATGTTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTATTGGTCAAAATATGATTGATTTATTAGCATCTAATGAAGATAAACAAAAGTATGACCGTTACCTTCTTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAACCATGTCCCAAGTGCAAGCGACCAATCGAAAAAAATCAAGGGTGTATGCACATCACGTGCACTCCTCCCTGTAAATTTGAATTTTGTTGGCTATGCCTTGGTGCATGGTCAGACCATGGCGAAAGAACCGGTGGTTTCTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGATATACACATTATTATGAACGTTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGATCAAATGCAAACTGTTCATATTGAGACGCTTAGTGACATTCAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACATATGCATATGGATACTATTTACCTGAGCATGAGCGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAATTACAGCAATTCCTCAATGCTGAAGAAGGCCCATCTAAAGAATTCAATGATTTCCGTACAAAGTTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTGGATGGTAATGGAGCTGTCTTGAGCAAAGCAACAAGCTCAAAAAATGCAGCAGGGAGCAGCAAGGCGAGAGCTGCGAGAATGCGAATCAGCAGAACGGGTGAGGATGGTCTCTGGTCCTGCGAGCATTGTACCTCTGTGAATGCCAGATCTTCATCCACATGCCATATTTGCAATCAACGTAGATGA 1752 0.4252 MDSEDDMHDANDMESLDDDDDFYSGDTDGAGMDYYSDYDDDDAGDYFDDADKIESRRPEQNFTILKESDIRMRQEDDINTVAAVLSVSKVIASILLRHHNWSVSKVHDAWFADEEQVRKAVGLLDEPVVLHPNARELTCGICFENYPRSGIEMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPDPSCGAAIGQNMIDLLASNEDKQKYDRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLDQMQTVHIETLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHERAKKQFFEYLQGEAESGLERLHQCAEKELQQFLNAEEGPSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDGNGAVLSKATSSKNAAGSSKARAARMRISRTGEDGLWSCEHCTSVNARSSSTCHICNQRR 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03108 583 SUPERFAMILY RING/U-box 209 277 - -
Trre8g03108 583 ProSiteProfiles Zinc finger RanBP2 type profile. 556 583 IPR001876 -
Trre8g03108 583 SUPERFAMILY RING/U-box 289 337 - -
Trre8g03108 583 CDD BRcat_RBR_ANKIB1 215 279 - -
Trre8g03108 583 Gene3D - 266 522 - -
Trre8g03108 583 ProSitePatterns Zinc finger RanBP2-type signature. 560 579 IPR001876 -
Trre8g03108 583 FunFam RBR-type E3 ubiquitin transferase 271 522 - -
Trre8g03108 583 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
Trre8g03108 583 SMART ibrneu5 283 344 IPR002867 GO:0008270
Trre8g03108 583 SMART ibrneu5 208 270 IPR002867 GO:0008270
Trre8g03108 583 CDD Rcat_RBR_ARI7-like 293 347 - -
Trre8g03108 583 MobiDBLite consensus disorder prediction 1 26 - -
Trre8g03108 583 Pfam Ariadne domain 357 519 IPR045840 -
Trre8g03108 583 SUPERFAMILY RING/U-box 135 220 - -
Trre8g03108 583 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Trre8g03108 583 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Trre8g03108 583 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Trre8g03108 583 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Trre8g03108 583 MobiDBLite consensus disorder prediction 1 28 - -
Trre8g03108 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 221 IPR013083 -
Trre8g03108 583 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03108 Trre-Chr8 27668079 27674778 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03108 16 583 ARIADNE family AT1G65430 68.696 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03108 K11968 - gmx:100784195 1022.31