Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03107 ATGGGAAGTTGCGTATCGACGCAAGGTAAAAATGGTGGACGAAAGAAATCAAAAGACAATCACATCAACAATAAACACAAAACCGAACAAAACATCGAGGCTACTACACCGACCGCGCGTAGATCAAGTGTGACGGTGCGTCCACTAAACGTGGTATCTAATCCATGTCCTGGTAACATATTTGATAAATATGAATTAGGAAAAGAGCTTGGGAGAGGCGAATTTGGTGTGACGCACCGTTGCGTGGACCTTAAAACAGGCGAGGCGTTTGCGTGTAAGAAGATTTCTAAGACGAAGTTGAGGACGGAGATTGATATTCAAGATGTGAGAAGAGAGGTTCAAATTATGAGACATTTGCCTCAACATCCTAATATTGTTGCTTTTAGAGAAGCTTATGAAGATAAAGATGCTGTTTATCTTGTTATGGAATTGTGTGAAGGTGGTGAACTTTTTGATAGGATTGTTGCTAAAGGTCATTATACAGAAAGAGCTGCTGCTAATGTTGCTAAAACCATTCTTGAAGTTTGCAAGGTGTGCCATGAACACGGTGTCATACATAGGGACTTAAAACCTGAAAATTTCTTATTTTCGGATGCAAGTGAGACAGCTTCCCTAAAGGCCATTGATTTTGGCCTTTCCACTTTCTATGTAATTGGTGATAGATTCAATGAAATCGTCGGAAGTCCCTATTACATGGCTCCTGAGGTTTTAAGACGTAACTACGGACAAGAAATCGATATCTGGAGCACAGGCGTTATCCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAACCGAAGAAGCCATAGCACAGGCGATAATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGAAGAAGCCAAATATCTTGTTAAGCGTATGCTTGATCCAAATCCATTCACCAGAATCACAGTTCAAGAAGTTCTTGATCATTCATGGATACAACATAGGGAGCATGGTAGAAATGTTTCTCTTGGAGACCAAGTAAGAATGAGGATCAAACAATTCTCTTTGATGAACAGATTCAAAAAGAAAGTCCTTAGAGTGGTGGCTGATAACTTGCCAGATGAACAAATTGATGGGTTTAGGCAAATGTTTGATATGATGGATAAGGATAAAAATGGATACTTAACATTTGAAGAGCTTAAAGATGGCTTTTCAATGATTGGTCACGTTATTCCTGATACCGATATTCAGATGTTAATAGATGCTGCAGATTGTGACGGAAACGGCACCTTGAATTGCGAAGATTTCATCACAATGAGTGTTCACTTGAGAAGGATTGGAAATGATGAGCATCTCACAGAAGCATTCAATTTCTTTGACAAGAATCAAAGTGGATATGTTGAGTTTGATGAGTTGAAAGATGCCTTATCAGATGATGATTCGACCGATGATCAAGTTATCAGAGACATTCTAAACGACGTAGACTTGGACAAGGACGGCCGAATAAGTTTCGAGGAATTTAAGGCAATGATGAAGACGGGAGGAGATTGGAAAATGGCGTCTCGACAATATTCAAGAGCATTACTAAATGCATTAAGCTTCAGAATGTTTAACAAATCTGGTGGAGTAGCTAACTAA 1608 0.3949 MGSCVSTQGKNGGRKKSKDNHINNKHKTEQNIEATTPTARRSSVTVRPLNVVSNPCPGNIFDKYELGKELGRGEFGVTHRCVDLKTGEAFACKKISKTKLRTEIDIQDVRREVQIMRHLPQHPNIVAFREAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFSDASETASLKAIDFGLSTFYVIGDRFNEIVGSPYYMAPEVLRRNYGQEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKYLVKRMLDPNPFTRITVQEVLDHSWIQHREHGRNVSLGDQVRMRIKQFSLMNRFKKKVLRVVADNLPDEQIDGFRQMFDMMDKDKNGYLTFEELKDGFSMIGHVIPDTDIQMLIDAADCDGNGTLNCEDFITMSVHLRRIGNDEHLTEAFNFFDKNQSGYVEFDELKDALSDDDSTDDQVIRDILNDVDLDKDGRISFEEFKAMMKTGGDWKMASRQYSRALLNALSFRMFNKSGGVAN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03107 535 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Trre8g03107 535 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Trre8g03107 535 FunFam calcium-dependent protein kinase 13 150 330 - -
Trre8g03107 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Trre8g03107 535 Pfam Protein kinase domain 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03107 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 59 494 - -
Trre8g03107 535 MobiDBLite consensus disorder prediction 12 28 - -
Trre8g03107 535 FunFam Calcium-dependent protein kinase 1 66 149 - -
Trre8g03107 535 MobiDBLite consensus disorder prediction 1 41 - -
Trre8g03107 535 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Trre8g03107 535 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03107 535 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Trre8g03107 535 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03107 535 CDD STKc_CAMK 63 321 - -
Trre8g03107 535 Gene3D - 331 504 - -
Trre8g03107 535 ProSiteProfiles EF-hand calcium-binding domain profile. 437 471 IPR002048 GO:0005509
Trre8g03107 535 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Trre8g03107 535 SUPERFAMILY EF-hand 361 501 IPR011992 -
Trre8g03107 535 SUPERFAMILY Protein kinase-like (PK-like) 60 323 IPR011009 -
Trre8g03107 535 Pfam EF-hand domain pair 440 502 IPR002048 GO:0005509
Trre8g03107 535 Pfam EF-hand domain pair 371 429 IPR002048 GO:0005509
Trre8g03107 535 CDD EFh 370 429 IPR002048 GO:0005509
Trre8g03107 535 CDD EFh 441 502 IPR002048 GO:0005509
Trre8g03107 535 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Trre8g03107 535 Gene3D Transferase(Phosphotransferase) domain 1 150 330 - -
Trre8g03107 535 SMART efh_1 369 397 IPR002048 GO:0005509
Trre8g03107 535 SMART efh_1 405 433 IPR002048 GO:0005509
Trre8g03107 535 SMART efh_1 476 504 IPR002048 GO:0005509
Trre8g03107 535 SMART efh_1 441 469 IPR002048 GO:0005509
Trre8g03107 535 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Trre8g03107 535 FunFam Calcium-dependent protein kinase 7 331 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03107 Trre-Chr8 27663281 27665917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03107 1 532 EF-hand Containing Proteins AT2G31500 67.718 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre8g03107 Pkinase 4.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03107 K13412 - gmx:100818929 872.848