Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03106 ATGAATCAATGTGATCCTTCAATCATCTGCAACATCGAAGTTTTGATCAAGAAACCGAAAGATACACCTTTTGCTACGCTTACATATGGCATCGGTTTTGAAAACTATCCTCGTTCTGGGATCGAAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATATATCAGTACGTCCATTAATGACGGTTCCGGATGTTTGATGTTGAGATGCCCTGATCCCAATTGTGGTGCTGCTATTGGTCAAGATATGATTGATTTATAA 273 0.4029 MNQCDPSIICNIEVLIKKPKDTPFATLTYGIGFENYPRSGIEMASCGHPYCFSCWEGYISTSINDGSGCLMLRCPDPNCGAAIGQDMIDL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03106 90 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 90 IPR013083 -
Trre8g03106 90 SUPERFAMILY RING/U-box 42 86 - -
Trre8g03106 90 ProSiteProfiles TRIAD supradomain profile. 25 90 IPR044066 -
Trre8g03106 90 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 9 88 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03106 Trre-Chr8 27658564 27661207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03106 12 89 C3H Transcription Factor Family AT2G31510 57.692 2.83e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03106 K11968 - gmx:100784195 126.716