Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03097 ATGTATCCTAAACGTTCTAGTCTAGATGATCCTGATTCCAGGCCGGTGCGCACAAGTGACAGGATCAAGACAAGGCCACCAGTTTATAACCGTGCACCGTTCTTGTATTACAATTCAAATCTTAGGCGCCCCAGAAAAAGCAAGAATAAGACAAGAACAGCAGCTTCGCAGATTGCTAAGATGTTGCGTCCAGGGAATCGGAAAGCACATGATTTGAATACTAATTCTGGCTCTGGCAACCTTCGGCGCTCAACCAGGGAGAGAAGGGTTAATGTAAACCTTATGGAGTTTGCAGACAGCTCTGGATCCGAGGATGCAGATTTAATGAGACCCTCATATCGACCATTGAGAAACCGGATTAGCAACAATGTCAGGCGGGATGATGTTGTATCTTCTAAACGCAAAAGAGCCGTGGATACTAAATCAGCACCTCGACGTGAAGGTCTACGGCCTCGTCGATCGAAGGCTGCTGGTAGAGAAAGATTAGTTTCAGAATCAGATGATGATCAAGACCTTTCAGAAGAGAAAGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAAGAAAATGATGCAGAAGATGGTCATAATGAGATGGAGGAGGATGTCGAGGGCGAAGATGAAGGTGAGGATGAAGGTGACGAGGATGGTGATGATGAAGATGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGAAATCGTGCCGAGGTTCGCAGGTTTTCTATGGAGGAAGGGAAGGCACGGCCAAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAACAGGGATGTAAGGAAGGGTGGATCACGAGTTCACAAGCGCCATCGCTTAACAAGGCCGGAAGATTCCGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGTCGAGGTGGAAACAGATCTGGCCCACCTTTTCTTTTTGGGGGTGTAGACACACATGGAACAGCAGCTTGGGGATTAAATCTTGCTGCATCGGGTTGGGGTCATCAGGGTGATGCTTTTGCTACCCTGACTTCAGGGATTCAAACTGCTGGTCCAAGCTCTAAGGGAGGGGCAGATATCCAACCCTTGCAGATTGATGATAGTGTAAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGTGTGTTGTTATGTGGGCCCCCTGGCACAGGAAAAACATTGATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAACTGAAACTTCTATTCGAGGAAGCACAGAGGAATCAACCTTCGATTATTTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGATCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGACTTGATTCTCGGGGACAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGGCGTCCTGGCAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGTGAAGCACGTGCTGAAATATTAGACATTCATACTCGCAAGTGGAAGCATCCTCCTCCAGAAGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCGGCCATTCGCGCTTTCCGTGAAAAATATCCACAGGTTTACACAAGTGATGACAAATTTCTAATTGATGTTAATTCTATCAGGGTTGAAAAGTGTCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGAGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATCTGGAGAAAGCCATGAGTACTATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGAATTGACCAAACTTTCAATGCTTTCGTATGGGTCTGCAATTCCACTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACAGGACTGGATCATCTTGGGCCTGCGGTTTTACACGAACTGGAAAAATTTCCTGTACATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAAACACCGGAGGAGGCGTTGGTACATATATTTGGCGAAGCTAGAAGAACAACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTATGCTAGAAGAATTGCCATCTGACTTACCTATCTTACTTCTTGGTACATCCTCAGCTGCACTTGCTGATGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCTCAGTTTATCAAGTGAACATGCCATCTACCGAAGATAGGACCTCATTTTTTGATCGTTTAATAGAAGCTGCCATGTCGATATTGTTAGAGAGAATCAGCAAGAAATCGCAGGATACAGGACGCCTTTCGGAACTTCCCAGGGCACCAAAATTGGCGAGTGGTCCAAAGGCGTCTGAGCTTAAAGCAAAGGTCGAAGCTGAGCAGCATGCACTCCGTAGGTTGAGAATGTGCCTCAGAGATATTTGCAACCGGGTATTGTACGACAAACGATTTAATGCCTTCCATTTTCCAGTCTCAGATGAAGATGCACCTAATTATCGCGACATTATACAAAACCCAATGGACATTGCTACCATCTTACAGCATGTTGATAACGGCAACTATATTACATGTGCTGCATTCCTGCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGTACTAGAATTGTCAGTAGAGCTTGCGAGCTCCGTGATGCGGTGCATGGGATGCTCTCTCAAATGGATCCAGCACTGGCTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCATTTGCCTGACGAATTAGGGGGTACTACATTCCCTGCTACTCCTGTTGTACAGCTGGGCACCACTACTAGAATGAGTGCTCGGCTTCGTCATGTCCAACCAGAGGTTAATATGGACCAGGGTTACGAAGTATTGAAGCGGACTAAGAAGATCGGTGATGGTGTACATGCAGAAGACAAATTGCAGCAAGATTCAATACCGACAAAGTCCTCCCAGGAGCAGCATCAGGTACAAGAAGAGGTGGATTCTGAAAGGGTGGAGCCTGTAGCAATGGATGGAGATTTGGATGGATCGTCTCCAAATAACCTTGCTGATGGTAGCAGTCTTCATGATGTCACGATGCTGGATGGTGAATTTTCAAGACAAGTTGAGTCTGTCAAGCAGCATTTCATTAAGCGCAGTGAAAAATACAGCATCCCACAACTTGAAAGGCTTTACACGAGAATTATGAAGGGTGTGTTTGAAACCAAAGATAAAGGATTGAATGACGATGACCTCAAAACTTCGGTTTTGGGATTTTTGTTGAAATTTGTAGAGGATGATGCCAATTTCTGA 3615 0.4473 MYPKRSSLDDPDSRPVRTSDRIKTRPPVYNRAPFLYYNSNLRRPRKSKNKTRTAASQIAKMLRPGNRKAHDLNTNSGSGNLRRSTRERRVNVNLMEFADSSGSEDADLMRPSYRPLRNRISNNVRRDDVVSSKRKRAVDTKSAPRREGLRPRRSKAAGRERLVSESDDDQDLSEEKVEQDETENGNDVEENDAEDGHNEMEEDVEGEDEGEDEGDEDGDDEDGEEEQDGRRRYDLRNRAEVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLTRPEDSDDSLLVDELDQGPAIPWGRGGNRSGPPFLFGGVDTHGTAAWGLNLAASGWGHQGDAFATLTSGIQTAGPSSKGGADIQPLQIDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVNSIRVEKCHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSTISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSAALADVEEVPTSVFPHRSVYQVNMPSTEDRTSFFDRLIEAAMSILLERISKKSQDTGRLSELPRAPKLASGPKASELKAKVEAEQHALRRLRMCLRDICNRVLYDKRFNAFHFPVSDEDAPNYRDIIQNPMDIATILQHVDNGNYITCAAFLQDIDLIVSNAKAYNGDDYNGTRIVSRACELRDAVHGMLSQMDPALAAYCDKIASQGGPVHLPDELGGTTFPATPVVQLGTTTRMSARLRHVQPEVNMDQGYEVLKRTKKIGDGVHAEDKLQQDSIPTKSSQEQHQVQEEVDSERVEPVAMDGDLDGSSPNNLADGSSLHDVTMLDGEFSRQVESVKQHFIKRSEKYSIPQLERLYTRIMKGVFETKDKGLNDDDLKTSVLGFLLKFVEDDANF 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03097 1204 Gene3D - 675 848 IPR027417 -
Trre8g03097 1204 FunFam ATPase family, AAA domain-containing 2 375 558 - -
Trre8g03097 1204 MobiDBLite consensus disorder prediction 167 224 - -
Trre8g03097 1204 SMART bromo_6 897 1004 IPR001487 GO:0005515
Trre8g03097 1204 MobiDBLite consensus disorder prediction 1080 1123 - -
Trre8g03097 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 701 929 IPR027417 -
Trre8g03097 1204 ProSiteProfiles Bromodomain profile. 920 982 IPR001487 GO:0005515
Trre8g03097 1204 PANTHER AAA DOMAIN-CONTAINING 1084 1191 IPR045199 -
Trre8g03097 1204 PRINTS Bromodomain signature 963 982 IPR001487 GO:0005515
Trre8g03097 1204 PRINTS Bromodomain signature 945 963 IPR001487 GO:0005515
Trre8g03097 1204 PRINTS Bromodomain signature 929 945 IPR001487 GO:0005515
Trre8g03097 1204 Pfam AAA+ lid domain 579 616 IPR041569 -
Trre8g03097 1204 ProSitePatterns AAA-protein family signature. 522 540 IPR003960 GO:0005524|GO:0016887
Trre8g03097 1204 Pfam Bromodomain 912 978 IPR001487 GO:0005515
Trre8g03097 1204 MobiDBLite consensus disorder prediction 1095 1111 - -
Trre8g03097 1204 MobiDBLite consensus disorder prediction 1 27 - -
Trre8g03097 1204 Pfam ATPase family associated with various cellular activities (AAA) 417 552 IPR003959 GO:0005524|GO:0016887
Trre8g03097 1204 MobiDBLite consensus disorder prediction 100 292 - -
Trre8g03097 1204 SMART AAA_5 413 554 IPR003593 GO:0016887
Trre8g03097 1204 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g03097 1204 FunFam ATPase family AAA domain-containing protein 2B 553 638 - -
Trre8g03097 1204 Gene3D - 553 638 - -
Trre8g03097 1204 MobiDBLite consensus disorder prediction 120 166 - -
Trre8g03097 1204 FunFam ATPase family AAA domain-containing protein 889 1017 - -
Trre8g03097 1204 CDD Bromo_AAA 897 1006 - -
Trre8g03097 1204 MobiDBLite consensus disorder prediction 63 86 - -
Trre8g03097 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 640 IPR027417 -
Trre8g03097 1204 Gene3D - 375 645 IPR027417 -
Trre8g03097 1204 Gene3D - 889 1017 IPR036427 GO:0005515
Trre8g03097 1204 MobiDBLite consensus disorder prediction 225 255 - -
Trre8g03097 1204 SUPERFAMILY Bromodomain 893 1008 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03097 Trre-Chr8 27590156 27599059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03097 363 617 Calmodulin-binding Proteins AT3G56690 36.293 7.08e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03097 K22531 - gmx:100787765 2007.26