Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03091 ATGGGGCATAAAAAGAAGCGTGGAGGAGGAAGTGGAGGAAGAAGAAACAAAGCAAGAACACCTTCCAAAGATCACACTTCTCCGTTCAGTCACGATGATTATAACGAACAACTCTCCGAAGAGATTACTGCACTATGTTCGATTTTTCAAGAGGATTGCGAATTTGTTCCTGGTTCGCCTCCTCAAGTAGTTATTAAGCTAAGGCCTTACTCGAATGACATGGGTTATGAGGATGTAGATGTTTCTGCTGTTCTTATTGTTAGGTGCTTGCCTGGGTACCCCTTCAAGTGTCCCAAGTTGCAGATTACTCCTGAGATGGGTTTATCAGAAACTGATGCTAATAAACTTTTGTCTCTCCTCCTTGATCAGGCTAGTTTAAACGCCAGGGAGGGACGAGTAATGATCTTCAATTTAGTTGAGGCTGCTCAAGAATTTCTGTCTAGAATTGAGCCTATTGCCAAACCAACTGAATCCAAGTTTTTGCACGCAACTACGGAAGGCATTGAAGAATTGTGTCTCAAGGATGTGACATCTTCAAATAAGAATAGATCTTTTGTTTATGGTTTCATCGACCTTTTCAGTGGCTATGGGGAGTCCTGGAATTGGAGTTTTGGAATTGATGAAACTGCTGTAAAAAGTTCTTCTCTTCCTTCCTCTAAGTTAGATGCCTCCAAGCCACGAATAGAAGCCCGTGAAAAGAAATCTGATAGCAAGGAAAACCCGTCCATATTGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGTAACAATTGCCTATCTTTGACTCGTTCAAGTAGTTCAAGTAGATCTCTGATGGATGGTTCTGATTCTGTAGGGGACGAGAATGAAGGTGAGAAAGAGTATTTTATTGTAGATGAGTATACAACAGAAGATAACAAAGGCATGTCAGGAAGTGAGTCTACAGAGTCTCTTTCTTCTGCATCCTCGCCTCATCACCAAGAAACATCTCAAACAATAGAGAAGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCCTCTAAAGGTACCTTGGCCGACTCTTTGCCGCAATTAGCAACAGAGCTGTACAATTTAGGGATCTTTTCTGACTCAGCACGTGATATGGCATCAAAACCGCCTTCCCTTTTCAACAAAACCTTTGATCATATCTTCAAGAAACACCTGGCATCATCTAGAATATCTCAATTTTGGACACCTTCTAATGCTGGAGACTCTAATACAGTTCACCATAGTTCTCGATATTTAAATGATTTTGAGGAGCTACGACCTCTTGGTCATGGTGGTTTTGGCCACGTTGTGTTGTGCAAAAATAAACTTGATGGAAGGCAGTATGCAATGAAAAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGGATATTAAGGGAGGTTGCTACACTTTCTCGATTACAACATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTACTGATTCTTATGGTGATTATGCTGGGGATTCAAGGACTCCAGCAAGTTCTACTTTCAGCTACAATGGGACAAGGTCCAATGATGGTGTTGGGCGTGAGAATCAACTTGAATCAACATATCTTTATATACAAATGGAGTATTGTCCCATGACTCTTCGCCAGATGTTTGAATCATATAATCATTTTGACAAAGAATTGGCATGGCATTTGTTTCGCCAAATAGTAGAAGGCTTGGCACATATACATGGACAAGGAATAATTCATCGGGACTTGACACCAAATAACATATTCTTTGATGCTCGTAATGATATTAAAATCGGTGACTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTTGCACATCCTGATACAACTGGACTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTTTATACAGCTCCTGAAATTGAGCAAGGGTGGCCTAAGATTGATGAAAAGGCTGACATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCATCCATTTGGGACCGCAATGGAGAGACACGTTGTTTTATCCGATCTAAAGCAAAAAGGGGAACTTCCACCTGCTTGGGTTGCCGAGTTTCCAGAACAGGAATCTTTGCTGCGGCAGTTATTGTCGCCAGGTCCCATAGATCGCCCATCTGCCACTGAACTTCTACACAATGCATTTCCTCCACGAATGGAGTCTGAATTGTTGGACGATATCTTGCGAACAATGCAGAAATCAGAGGATAGAAGCATTTACGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGCACAAAACACATTCATCAGGTTGGCAGATTGGGGTCAGTTGGAGATAGTAGTTCATCAATTCAGCACACAGATCTTGTAACTGAGGTTCGAGATTATGTTGTAGAAGTCAACAAGGAAATTTTCAGGCAGCATTGTGCTAAACACCTAGAAATATCACCAGTGCAATTATTGGATGATTGTCCACAATTTAATAGAAACGCAGTTAAACTTTTGACTCAAGGAGGAAACATGCTTGAACTCTCCCATGAGCTGCGTTTGCCGTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATATGTCTACAGAAGAGCAGTTGGGCATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATAATTGGTGGTACTTCAGCATTGACAGAGGCAGAGGTCATAAAGGTCACGAAGGACATAGTCACTTGTTTTTTCCATGAAGACTCGTGTGACATTCATCTAAACCACGCTGACCTCCTCGGTGCAATTTGGTCATGGACTGGAATCAAGGTAGAACACAGAGTTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCTCAATCCTCAGAAAGGAAATCAAAATGGGTAGTGATAAGGCGGCAGCTTTTGCAGGAACTGGGATTAGATGAAGCTATGGTAAATAGGTTGCAGACTGTAGGTCTGCGATTCTGTGGATCTGCAGATCAGGCACTTCCCAGACTAAGAGGAGCTCTACCATCTGATAAGCGTACCTTCAAGGCACTTGATGAATTGTCTGAGCTTGCGAATCTCTTGAGAATTTGGAGGATTGACAAAAATGTATATATAGATGCATTAATGGCACCAAACGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTTCTGGATCACTCTCTGAAGGAGTCTTGTTAGCTGTTGGTGGTCGATATGACAATTTGCTTCATCAATTGAGGAGTAGCGACTATAAAGGAAATCCTCCCACTGGTATGGGAACTAGCCTTGCACTAGAGACAATAATTCAGAATTGTCCTGTAGATTTTAAGCCCAGTCGAAATGAAGCCAGCATCAGTATTCTTGTGTGCTCAAGAGGAGGAGGTGGTCTGTTGGTGGAGCGCATGGAACTAGTTGCTGAATTGTGGCAGGAGAACTTTAAGGCCGAATTTGTTCCTGTCCCTGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGATATCAAATGTCTCGTTATTATTACAGATGCAAGTTTCTCCCTGACAGATACAGTTAAGGTTCGACATCTTGAACTTAAGAAGGAGAAAAATGTTGAGAGAGAGAACCTAGTCAAGTTTCTATCGGATGCTATGGCAACACAATTTAGAAACCCCTACATATGGATCTGA 3720 0.414 MGHKKKRGGGSGGRRNKARTPSKDHTSPFSHDDYNEQLSEEITALCSIFQEDCEFVPGSPPQVVIKLRPYSNDMGYEDVDVSAVLIVRCLPGYPFKCPKLQITPEMGLSETDANKLLSLLLDQASLNAREGRVMIFNLVEAAQEFLSRIEPIAKPTESKFLHATTEGIEELCLKDVTSSNKNRSFVYGFIDLFSGYGESWNWSFGIDETAVKSSSLPSSKLDASKPRIEAREKKSDSKENPSILQELPAKLDTVGEVSEDSNNCLSLTRSSSSSRSLMDGSDSVGDENEGEKEYFIVDEYTTEDNKGMSGSESTESLSSASSPHHQETSQTIEKDLIMVHMLRLVCASKGTLADSLPQLATELYNLGIFSDSARDMASKPPSLFNKTFDHIFKKHLASSRISQFWTPSNAGDSNTVHHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAMKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVTDSYGDYAGDSRTPASSTFSYNGTRSNDGVGRENQLESTYLYIQMEYCPMTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLAHPDTTGLSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGELPPAWVAEFPEQESLLRQLLSPGPIDRPSATELLHNAFPPRMESELLDDILRTMQKSEDRSIYDKVLNAIFDEEMLSTKHIHQVGRLGSVGDSSSSIQHTDLVTEVRDYVVEVNKEIFRQHCAKHLEISPVQLLDDCPQFNRNAVKLLTQGGNMLELSHELRLPFVNWIISNQKSSFKRYEISYVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTKDIVTCFFHEDSCDIHLNHADLLGAIWSWTGIKVEHRVKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELGLDEAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRTFKALDELSELANLLRIWRIDKNVYIDALMAPNESYHRDLFFQVYLRKENSSGSLSEGVLLAVGGRYDNLLHQLRSSDYKGNPPTGMGTSLALETIIQNCPVDFKPSRNEASISILVCSRGGGGLLVERMELVAELWQENFKAEFVPVPDPSLTEQYEYANEHDIKCLVIITDASFSLTDTVKVRHLELKKEKNVERENLVKFLSDAMATQFRNPYIWI 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03091 1239 FunFam eIF-2-alpha kinase GCN2 29 155 - -
Trre8g03091 1239 Gene3D Bira Bifunctional Protein; Domain 2 789 1122 IPR045864 -
Trre8g03091 1239 SUPERFAMILY UBC-like 33 146 IPR016135 -
Trre8g03091 1239 PANTHER HISTIDYL-TRNA SYNTHETASE 787 1233 - -
Trre8g03091 1239 MobiDBLite consensus disorder prediction 1 33 - -
Trre8g03091 1239 Pfam Histidyl-tRNA synthetase 877 1116 IPR041715 -
Trre8g03091 1239 MobiDBLite consensus disorder prediction 285 300 - -
Trre8g03091 1239 SUPERFAMILY Class II aaRS ABD-related 1132 1229 - -
Trre8g03091 1239 CDD STKc_EIF2AK4_GCN2_rpt2 419 725 - -
Trre8g03091 1239 FunFam eIF-2-alpha kinase GCN2 414 542 - -
Trre8g03091 1239 FunFam eIF-2-alpha kinase GCN2 546 738 - -
Trre8g03091 1239 ProSitePatterns Protein kinases ATP-binding region signature. 432 455 IPR017441 GO:0005524
Trre8g03091 1239 SUPERFAMILY Class II aaRS and biotin synthetases 794 1117 IPR045864 -
Trre8g03091 1239 Pfam Protein kinase domain 426 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03091 1239 MobiDBLite consensus disorder prediction 224 240 - -
Trre8g03091 1239 Pfam Anticodon binding domain of tRNAs 1134 1231 IPR024435 -
Trre8g03091 1239 Gene3D Phosphorylase Kinase; domain 1 413 542 - -
Trre8g03091 1239 MobiDBLite consensus disorder prediction 304 327 - -
Trre8g03091 1239 MobiDBLite consensus disorder prediction 215 243 - -
Trre8g03091 1239 FunFam eIF-2-alpha kinase GCN2 787 1123 - -
Trre8g03091 1239 MobiDBLite consensus disorder prediction 262 281 - -
Trre8g03091 1239 ProSiteProfiles Protein kinase domain profile. 426 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03091 1239 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Trre8g03091 1239 SMART RWD2001b 40 149 IPR006575 GO:0005515
Trre8g03091 1239 Gene3D - 1130 1229 IPR036621 -
Trre8g03091 1239 MobiDBLite consensus disorder prediction 262 329 - -
Trre8g03091 1239 Pfam RWD domain 36 146 IPR006575 GO:0005515
Trre8g03091 1239 MobiDBLite consensus disorder prediction 17 33 - -
Trre8g03091 1239 SUPERFAMILY Protein kinase-like (PK-like) 422 739 IPR011009 -
Trre8g03091 1239 Gene3D Transferase(Phosphotransferase) domain 1 545 735 - -
Trre8g03091 1239 ProSitePatterns Tyrosine protein kinases specific active-site signature. 581 593 IPR008266 GO:0004672|GO:0006468
Trre8g03091 1239 FunFam Histidine--tRNA ligase, cytoplasmic 1130 1229 - -
Trre8g03091 1239 Gene3D Ubiquitin Conjugating Enzyme 27 155 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03091 Trre-Chr8 27534362 27550323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03091 415 728 MAP Kinase Kinase Kinase AT1G63700 26.543 9.40e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Trre8g03091 Pkinase 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03091 K16196 - gmx:100797996 2019.2