Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03090 ATGGGGCATAAAAAGAAGCGTGGAGGAGGAAGTGGAGGAAGAAGAAACAAAGCAAGAACACCTTCCAAAGATCACACTTCTCCGTTCAGTCACGATGATTATAACGAACAACTCTCCGAAGAGATTACTGCACTATGTTCGATTTTTCAAGAGGATTGCGAATTTGTTCCTGGTTCGCCTCCTCAAGTAGTTATTAAGCTAAGGCCTTACTCGAATGACATGGGTTATGAGGATGTAGATGTTTCTGCTGTTCTTATTGTTAGGTGCTTGCCTGGGTACCCCTTCAAGTGTCCCAAGTTGCAGATTACTCCTGAGATGGGTTTATCAGAAACTGATGCTAATAAACTTTTGTCTCTCCTCCTTGATCAGGCTAGTTTAAACGCCAGGGAGGGACGAGTAATGATCTTCAATTTAGTTGAGGCTGCTCAAGAATTTCTGTCTAGAATTGAGCCTATTGCCAAACCAACTGAATCCAAGTTTTTGCACGCAACTACGGAAGGCATTGAAGAATTGTGTCTCAAGGATGTGACATCTTCAAATAAGAATAGATCTTTTGTTTATGGTTTCATCGACCTTTTCAGTGGCTATGGGGAGTCCTGGAATTGGAGTTTTGGAATTGATGAAACTGCTGTAAAAAGTTCTTCTCTTCCTTCCTCTAAGTTAGATGCCTCCAAGCCACGAATAGAAGCCCGTGAAAAGAAATCTGATAGCAAGGAAAACCCGTCCATATTGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGTTAGTGAAGACAGTAACAATTGCCTATCTTTGACTCGTTCAAGTAGTTCAAGTAGATCTCTGATGGATGGTTCTGATTCTGTAGGGGACGAGAATGAAGATGAGTATACAACAGAAGATAACAAAGGCATGTCAGGAAGTGAGTCTACAGAGTCTCTTTCTTCTGCATCCTCGCCTCATCACCAAGAAACATCTCAAACAATAGAGAAGGATCTAATAATGGTTCACATGCTTCGCCTTGTTTGTGCCTCTAAAGGTACCTTGGCCGACTCTTTGCCGCAATTAGCAACAGAGCTGTACAATTTAGGGATCTTTTCTGACTCAGCACGTGATATGGCATCAAAACCGCCTTCCCTTTTCAACAAAACCTTTGATCATATCTTCAAGAAACACCTGGCATCATCTAGAATATCTCAATTTTGGACACCTTCTAATGCTGGAGACTCTAATACAGTTCACCATAGTTCTCGATATTTAAATGATTTTGAGGAGCTACGACCTCTTGGTCATGGTGGTTTTGGCCACGTTGTGTTGTGCAAAAATAAACTTGATGGAAGGCAGTATGCAATGAAAAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGGATATTAAGGGAGGTTGCTACACTTTCTCGATTACAACATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTACTGATTCTTATGGTGATTATGCTGGGGATTCAAGGACTCCAGCAAGTTCTACTTTCAGCTACAATGGGACAAGGTCCAATGATGGTGTTGGGCGTGAGAATCAACTTGAATCAACATATCTTTATATACAAATGGAGTATTGTCCCATGACTCTTCGCCAGATGTTTGAATCATATAATCATTTTGACAAAGAATTGGCATGGCATTTGTTTCGCCAAATAGTAGAAGGCTTGGCACATATACATGGACAAGGAATAATTCATCGGGACTTGACACCAAATAACATATTCTTTGATGCTCGTAATGATATTAAAATCGGTGACTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTTGCACATCCTGATACAACTGGACTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTTTATACAGCTCCTGAAATTGAGCAAGGGTGGCCTAAGATTGATGAAAAGGCTGACATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCATCCATTTGGGACCGCAATGGAGAGACACGTTGTTTTATCCGATCTAAAGCAAAAAGGGGAACTTCCACCTGCTTGGGTTGCCGAGTTTCCAGAACAGGAATCTTTGCTGCGGCAGTTATTGTCGCCAGGTCCCATAGATCGCCCATCTGCCACTGAACTTCTACACAATGCATTTCCTCCACGAATGGAGTCTGAATTGTTGGACGATATCTTGCGAACAATGCAGAAATCAGAGGATAGAAGCATTTACGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGCACAAAACACATTCATCAGGTTGGCAGATTGGGGTCAGTTGGAGATAGTAGTTCATCAATTCAGCACACAGATCTTGTAACTGAGGTTCGAGATTATGTTGTAGAAGTCAACAAGGAAATTTTCAGGCAGCATTGTGCTAAACACCTAGAAATATCACCAGTGCAATTATTGGATGATTGTCCACAATTTAATAGAAACGCAGTTAAACTTTTGACTCAAGGAGGAAACATGCTTGAACTCTCCCATGAGCTGCGTTTGCCGTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATATGTCTACAGAAGAGCAGTTGGGCATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATAATTGGTGGTACTTCAGCATTGACAGAGGCAGAGGTCATAAAGGTCACGAAGGACATAGTCACTTGTTTTTTCCATGAAGACTCGTGTGACATTCATCTAAACCACGCTGACCTCCTCGGTGCAATTTGGTCATGGACTGGAATCAAGGTAGAACACAGAGTTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCTCAATCCTCAGAAAGGAAATCAAAATGGGTAGTGATAAGGCGGCAGCTTTTGCAGGAACTGGGATTAGATGAAGCTATGGTAAATAGGTTGCAGACTGTAGGTCTGCGATTCTGTGGATCTGCAGATCAGGCACTTCCCAGACTAAGAGGAGCTCTACCATCTGATAAGCGTACCTTCAAGGCACTTGATGAATTGTCTGAGCTTGCGAATCTCTTGAGAATTTGGAGGATTGACAAAAATGTATATATAGATGCATTAATGGCACCAAACGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTTCTGGATCACTCTCTGAAGGAGTCTTGTTAGCTGTTGGTGGTCGATATGACAATTTGCTTCATCAATTGAGGAGTAGCGACTATAAAGGAAATCCTCCCACTGGTATGGGAACTAGCCTTGCACTAGAGACAATAATTCAGAATTGTCCTGTAGATTTTAAGCCCAGTCGAAATGAAGCCAGCATCAGTATTCTTGTGTGCTCAAGAGGAGGAGGTGGTCTGTTGGTGGAGCGCATGGAACTAGTTGCTGAATTGTGGCAGGAGAACTTTAAGGCCGAATTTGTTCCTGTCCCTGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGATATCAAATGTCTCGTTATTATTACAGATGCAAGTTTCTCCCTGACAGATACAGTTAAGGTTCGACATCTTGAACTTAAGAAGGAGAAAAATGTTGAGAGAGAGAACCTAGTCAAGTTTCTATCGGATGCTATGGCAACACAATTTAGAAACCCCTACATATGGATCTGA 3696 0.4148 MGHKKKRGGGSGGRRNKARTPSKDHTSPFSHDDYNEQLSEEITALCSIFQEDCEFVPGSPPQVVIKLRPYSNDMGYEDVDVSAVLIVRCLPGYPFKCPKLQITPEMGLSETDANKLLSLLLDQASLNAREGRVMIFNLVEAAQEFLSRIEPIAKPTESKFLHATTEGIEELCLKDVTSSNKNRSFVYGFIDLFSGYGESWNWSFGIDETAVKSSSLPSSKLDASKPRIEAREKKSDSKENPSILQELPAKLDTVGEVSEDSNNCLSLTRSSSSSRSLMDGSDSVGDENEDEYTTEDNKGMSGSESTESLSSASSPHHQETSQTIEKDLIMVHMLRLVCASKGTLADSLPQLATELYNLGIFSDSARDMASKPPSLFNKTFDHIFKKHLASSRISQFWTPSNAGDSNTVHHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAMKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVTDSYGDYAGDSRTPASSTFSYNGTRSNDGVGRENQLESTYLYIQMEYCPMTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLAHPDTTGLSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGELPPAWVAEFPEQESLLRQLLSPGPIDRPSATELLHNAFPPRMESELLDDILRTMQKSEDRSIYDKVLNAIFDEEMLSTKHIHQVGRLGSVGDSSSSIQHTDLVTEVRDYVVEVNKEIFRQHCAKHLEISPVQLLDDCPQFNRNAVKLLTQGGNMLELSHELRLPFVNWIISNQKSSFKRYEISYVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTKDIVTCFFHEDSCDIHLNHADLLGAIWSWTGIKVEHRVKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELGLDEAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRTFKALDELSELANLLRIWRIDKNVYIDALMAPNESYHRDLFFQVYLRKENSSGSLSEGVLLAVGGRYDNLLHQLRSSDYKGNPPTGMGTSLALETIIQNCPVDFKPSRNEASISILVCSRGGGGLLVERMELVAELWQENFKAEFVPVPDPSLTEQYEYANEHDIKCLVIITDASFSLTDTVKVRHLELKKEKNVERENLVKFLSDAMATQFRNPYIWI 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03090 1231 MobiDBLite consensus disorder prediction 256 281 - -
Trre8g03090 1231 Gene3D - 1122 1221 IPR036621 -
Trre8g03090 1231 Pfam Anticodon binding domain of tRNAs 1126 1223 IPR024435 -
Trre8g03090 1231 FunFam eIF-2-alpha kinase GCN2 406 534 - -
Trre8g03090 1231 PANTHER HISTIDYL-TRNA SYNTHETASE 779 1225 - -
Trre8g03090 1231 MobiDBLite consensus disorder prediction 1 33 - -
Trre8g03090 1231 FunFam eIF-2-alpha kinase GCN2 538 730 - -
Trre8g03090 1231 ProSiteProfiles Protein kinase domain profile. 418 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03090 1231 SUPERFAMILY Class II aaRS ABD-related 1124 1221 - -
Trre8g03090 1231 Pfam Histidyl-tRNA synthetase 869 1108 IPR041715 -
Trre8g03090 1231 SUPERFAMILY Class II aaRS and biotin synthetases 786 1109 IPR045864 -
Trre8g03090 1231 Pfam Protein kinase domain 418 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03090 1231 SUPERFAMILY UBC-like 33 146 IPR016135 -
Trre8g03090 1231 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Trre8g03090 1231 MobiDBLite consensus disorder prediction 224 240 - -
Trre8g03090 1231 Pfam RWD domain 36 146 IPR006575 GO:0005515
Trre8g03090 1231 Gene3D Phosphorylase Kinase; domain 1 405 534 - -
Trre8g03090 1231 Gene3D Ubiquitin Conjugating Enzyme 27 155 IPR016135 -
Trre8g03090 1231 FunFam Histidine--tRNA ligase, cytoplasmic 1122 1221 - -
Trre8g03090 1231 ProSitePatterns Tyrosine protein kinases specific active-site signature. 573 585 IPR008266 GO:0004672|GO:0006468
Trre8g03090 1231 MobiDBLite consensus disorder prediction 215 321 - -
Trre8g03090 1231 Gene3D Bira Bifunctional Protein; Domain 2 781 1114 IPR045864 -
Trre8g03090 1231 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Trre8g03090 1231 SMART RWD2001b 40 149 IPR006575 GO:0005515
Trre8g03090 1231 MobiDBLite consensus disorder prediction 298 319 - -
Trre8g03090 1231 CDD STKc_EIF2AK4_GCN2_rpt2 411 717 - -
Trre8g03090 1231 SUPERFAMILY Protein kinase-like (PK-like) 414 731 IPR011009 -
Trre8g03090 1231 MobiDBLite consensus disorder prediction 17 33 - -
Trre8g03090 1231 FunFam eIF-2-alpha kinase GCN2 779 1115 - -
Trre8g03090 1231 FunFam eIF-2-alpha kinase GCN2 29 155 - -
Trre8g03090 1231 Gene3D Transferase(Phosphotransferase) domain 1 537 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03090 Trre-Chr8 27534362 27550323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03090 407 720 MAP Kinase Kinase Kinase AT1G63700 26.543 8.61e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Trre8g03090 Pkinase 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03090 K16196 - gmx:100797996 1991.47