Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03089 ATGTCATCCATTGCAGTTTCATATGGTGAAAAAGGTTCAGTTTTTTGTGGTTTGAAATCAGATGGATCTCATACTGTAACCTGTTATGGATCTAACTCAGCCATAATCTATGAAACACCAACACATTTCTCATTTCTTGGCTTAACAGCTGGTGATGGATTTGTATGTGGCCTTCTAATGGATTCAAATCAACCTTACTGTTGGGGTAACAGTGGCTACATTGAAATGGGTGTGCCTCAACCTATGATTAAAAAAGCTCAGTACTTAGAAATTAGTGCTGGTGATTACCATGTATGTGGATTAAGAAAACCTTGGAAAGAAAAAAATGTTTCTTTAGTTGATTGTTGGGGCTATAACATGACCAAAAGTTACATGTTTGATGGAATGATTCAATCAATCTCAGCTGGTTCTGTGTTTAACTGTGGATTGTTTTCGAACAACGGGAGTGTTTTCTGTTGGGGCGATGAGACTAGTAGCAAGGTTATTAGTTTGACTCCTTTGAAAATGAAGTTCAGAAAAATTTCTGCTGGTGGATATCATGTGTGTGGAATCTTAGAAGGGGTAAATTCTAGAACTTTTTGTTGGGGGAGAAGCTTGGACAATGAGGAACAAATTTCAGTAACACATGCAGGTCAAGGAAATGTAGATTTGGCTCCAAATGATCCTATGATTTCTATAGTAGGAGGAAGGTTTCATGCTTGTGGAATAAAAAGCTATGATAATGGTGTTATTTGTTGGGGATTTATGATCAAATCAAGCACTTCAGCTCCTAGTGAGATTAAGGTTTATGAGATTGCAGCTGGTGATTATTTTACTTGTGGAGTACTTGCTGGGAAAAAATCTCTTGTGCCTTTTTGTTGGGGTGTTGGTTTCCCTACTTCTCTTCCTTTAGCTGTTGCGCCGGGAATATGCAAGCCTTATCCATGTTCTTATGGTTTCTATGAATTTGATCAAAAGGGTCTTTGCAAGTTTCCAAATTCTGGTGTTTGCATGCCATGCAGTGGTGATTGTCCTGTTGAAATGTATCAGAAAAGTGTATGCAATTTGGCTTCTGATAGAGTGTGTGAATATAACTGTTCTGCTTGTTCTTCACATGAATGTTTCTTACACTGCTTCTCTTCATATTCTAATGTCGGCAATGAGAAGAAAAATGAGAAAATTTGGGCTTTGCAGTTACCAGTGATTATTGCAGAGATTGGTTTTGTAATTTTCATAGTTAGTATTGCATCGTTAACCTCGGTTTTGTATGTTCGCCACAGGCTAAGAGATTGTGAGTGTTCAGCAAGATTAAAAAAGGCGAAGAGACTTAATCGAAGTTCTTCCCTTCAAAATGAGAACCGCAAGATCCGTCCGGAAATGGAGGAGTTCAAGCTTAGGAAGGCTCAAAGGTTTACCTATGAAGAACTTGAAACTGCAACAAATGGATTCAAAGAAGAATCAATAGTAGGAAAAGGAAGTTTTTCTTGTGTATTCAGAGGAGTTTTAAAAGATGGAACTGTTGTAGCTGTTAAAAGGGCTAAAGTATCTCTTTCTCCTCCCAACAACATGCACAAGAATAACAAAGAATTTCACACTGAACTTGACTTACTCTCGAGATTAAATCATGCTCATTTGCTCAACCTGCTAGGCTATTGCGAAGAAGGCGGAGAAAGACTTCTTGTTTATGAGTTCATGGCTCATGGATCTTTGTATCAACACCTTCATGGACCAAATCAAGTGTTGAAACAGGAATTAAACTGGATAAGGAGAGTAACAATAGCAGTTCAAGCGGCTCGTGGGATCGAATATTTACACGGCTACGCTTGTCCTGTAGATAGTAATTCTCCACTTGCCGAGCTACCGGCCGGAACTCTCGGTTACCTTGATCCTGAATACTATAGACTCCATTACCTTACAACAAAATCTGATGTCTATAGTTTTGGTGTTCTACTCTTGGAAATTCTAAGTGGTAGAAAAGCTATTGACATGATGCAATATGAAGAAGGAAATAACATAGTTGAATGGGCAGTGCCTTTGATAAAATCAGGTGATATAGCTGCAATTTTGGATCCAATTCTTAAACCTCCTCGCGAAATCGACGCGTTGAAAAAGATAGCTAATGTAGCTTGTAAATGTGTGAGAATGAGAGGTAAAGAGAGACCTTCAATGGACAAAGTAACAACTTCTTTAGAAAGATCTCTTGCAGTGTTAATGGGAAGTCCATGTATCGATCAACCGATTTTACCTTCTGAAGTTGTTTTAGGAAGTAATAGATTGCATAGAAAATCATCTCAAATGTCTTCAAATAGGTCAGTTTCTGAAAATGAGGATCAAAGATTTGAGCTTAGAGCACCTTCATGGATAACATTTCCTAGTGTTGCATCTTCTCTAAGAAGAAAATCATCAATGTCAGAAGCAGATGTTGATGGAAAAATTGCAGATGTGAAGATTAATATTGGCAATGTTGGAGGGAGTAGTGATGTGTTGAGAAGTTTAGAGGAAGAGATTGGACCTGCTTCTCCACAAGAGAGGTTGTTTTTGGAACACAACTTCTAA 2535 0.3815 MSSIAVSYGEKGSVFCGLKSDGSHTVTCYGSNSAIIYETPTHFSFLGLTAGDGFVCGLLMDSNQPYCWGNSGYIEMGVPQPMIKKAQYLEISAGDYHVCGLRKPWKEKNVSLVDCWGYNMTKSYMFDGMIQSISAGSVFNCGLFSNNGSVFCWGDETSSKVISLTPLKMKFRKISAGGYHVCGILEGVNSRTFCWGRSLDNEEQISVTHAGQGNVDLAPNDPMISIVGGRFHACGIKSYDNGVICWGFMIKSSTSAPSEIKVYEIAAGDYFTCGVLAGKKSLVPFCWGVGFPTSLPLAVAPGICKPYPCSYGFYEFDQKGLCKFPNSGVCMPCSGDCPVEMYQKSVCNLASDRVCEYNCSACSSHECFLHCFSSYSNVGNEKKNEKIWALQLPVIIAEIGFVIFIVSIASLTSVLYVRHRLRDCECSARLKKAKRLNRSSSLQNENRKIRPEMEEFKLRKAQRFTYEELETATNGFKEESIVGKGSFSCVFRGVLKDGTVVAVKRAKVSLSPPNNMHKNNKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLYQHLHGPNQVLKQELNWIRRVTIAVQAARGIEYLHGYACPVDSNSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMMQYEEGNNIVEWAVPLIKSGDIAAILDPILKPPREIDALKKIANVACKCVRMRGKERPSMDKVTTSLERSLAVLMGSPCIDQPILPSEVVLGSNRLHRKSSQMSSNRSVSENEDQRFELRAPSWITFPSVASSLRRKSSMSEADVDGKIADVKINIGNVGGSSDVLRSLEEEIGPASPQERLFLEHNF 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03089 844 FunFam Serine/threonine-protein kinase-like protein CR4 1 162 - -
Trre8g03089 844 ProSitePatterns Protein kinases ATP-binding region signature. 482 504 IPR017441 GO:0005524
Trre8g03089 844 Gene3D Transferase(Phosphotransferase) domain 1 558 601 - -
Trre8g03089 844 Pfam Protein tyrosine and serine/threonine kinase 620 722 IPR001245 GO:0004672|GO:0006468
Trre8g03089 844 Pfam Protein tyrosine and serine/threonine kinase 479 601 IPR001245 GO:0004672|GO:0006468
Trre8g03089 844 Gene3D Transferase(Phosphotransferase) domain 1 602 729 - -
Trre8g03089 844 FunFam serine/threonine-protein kinase-like protein CCR1 446 557 - -
Trre8g03089 844 Gene3D Phosphorylase Kinase; domain 1 445 557 - -
Trre8g03089 844 ProSiteProfiles Protein kinase domain profile. 476 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g03089 844 Gene3D - 48 300 IPR009091 -
Trre8g03089 844 SUPERFAMILY RCC1/BLIP-II 13 248 IPR009091 -
Trre8g03089 844 SUPERFAMILY Protein kinase-like (PK-like) 454 723 IPR011009 -
Trre8g03089 844 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03089 Trre-Chr8 27520486 27523116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03089 1 844 Receptor kinase-like Gene Family AT3G59420 62.641 0.0 1087
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trre8g03089 PK_Tyr_Ser-Thr 5.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03089 - - gmx:100797455 1363.98