Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03082 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCTGCTACGGTTATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAACAAGCTTGCTAGCAAGCACCAAAGGCTTCTTCTTCAATGTTTATCTAACAAGCTTCCCAAATGTGATATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGCAAAGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCCGCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGCGTGGCTTTGGGTTCTAGTTGCACCAAAGACAATGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACACAACATGTTCCTGTCAAAGTTCCTCCTCAGCAAGTACCTAGTTTCACATCATCTTGGGCTGTTGATGACCTATTGCAATTTACAGATTTCGATTCACCAGACAAAAAGCAATCCCTAGAGTTTGGAGAGCTTGAATGGCTATCAGATGCAGGTCTATTCAATGAACAGTTTCCTCATGAAGGTTTAGCTGCAGCTGAAGTTCCTCAACTTTCCATAACGCACGCCAGCAATGTTGCTTCATACAAAGCGCCTAAATCCTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAGGACGATGATGATGAGCACTTCACGGTGCCTGATCTCGGTTAA 720 0.4292 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSSCTKDNEKSQVEPSNPDTQHVPVKVPPQQVPSFTSSWAVDDLLQFTDFDSPDKKQSLEFGELEWLSDAGLFNEQFPHEGLAAAEVPQLSITHASNVASYKAPKSYMSYKKPRIEVRHEDDDDEHFTVPDLG 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03082 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre8g03082 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Trre8g03082 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre8g03082 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 - -
Trre8g03082 239 CDD Bbox1_BBX-like 5 47 - -
Trre8g03082 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Trre8g03082 239 Gene3D Classic Zinc Finger 1 97 - -
Trre8g03082 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Trre8g03082 239 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Trre8g03082 239 CDD Bbox1_BBX-like 56 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03082 Trre-Chr8 27466295 27468408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03082 1 161 Orphan Transcription Factor Family AT1G06040 67.262 6.82e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trre8g03082 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03082 - - gmx:100779183 421.394