Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03068 ATGCCGCTTCCGACCAAACCAACGAGGCCACTCCATGAAACCGGACGAGACTCGGAGGAATCGTCTACCCCTTCGAACAACCTATGGGTTGGAAATCTAACGCCAGACGTTAGAGATTCCGATCTGATGGATCTATTCGCTCAATACGGCGCTCTCGATAGCGTTACATCTTATTCCGCTCGCAGTTACGCTTTCGTGTTCTTCAAACGTATCGAAGATGCAAAAGCCGCTAAAAACGCTCTTCAAGGATTCTCTTTTCGTGGCAATTCATTGAAAATTGAGTTTGCTAGACCGGCAAGGCCATGTAAACAACTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTAGAAGCTGACTTCCGAAAATTTGGTAAAATTGAGGATTACAAGTTCATCAGAGACAGAAATACTGCATGTGTTGAGTTTTTCAATTTGGACAATGCTATTCAGGCAATGAAAAGTATGAATGGAAAACGTATCGGCGGGGAAAATATTCGTGTCGACTTCCTCCGGTCAAATTCTACAAAAAAAGATCAATTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCGGGCCTACTGATTCCTATTCTGGACAAAAAAGGCCACTGAATTCACAGCCTCAAATGGGGAGGAAGGGTGATGGTCAACCCAGTAATATTTTGTGGATCGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCGATGATTCTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTTGTTGAGTTTAGAAGTGTTGATGAAGCCCGGCGCGCAAAAGAGGGCCTTCAAGGACGCCTCTTCAATGATCCTCGCATAACAATTAATTTTTCAAATGGTGACCAGGCGCATGGCAAAGATTACTCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCATTCATATCGACCGTTACAAATGGATTTATTTGGTCATAATTGTCCTATGGTTCCGAATAATTTTCCTGGACATTTGCCAACTGGCGGTATTGTTGGTCCAAACATACAAATGCGACCTTTTGGTCCTCAAAGTGGCCCTGAATCTGTTGTTTCTGGCCCTGAGTTTAACGAGAATAGTACACTACACAAATTTCAGGATGGTAGCTCGGCAAATAAGATGGGTTCAAACTGGAAAAGACCATCTCCTCCTGCACCAGGGTTGCTTTCTTCTCCTGTACCAGGTGCTAGGCTTCCTGCAAGATCAACCTCTGGTGCATGGGATGTACTTGACGTAAACCATAATCCTAGAGATTCTAAGCGCTCTAGGATAGATGGTGCATTACCTAATGATGATCCTTATGGAGGAAGGGGCATCCTTGGACCAGCAAGCATGAGGAATACAGGTGGAGTACATTCTTCAGTCCAACCTGGTGGTCTTGATCATATATGGCGCGGACTTATTGCAAAAGGTGGAACGCCTGTTTGTCGTGCTAGATGCGTGCCTGTTGGGAAAGGGATCGGGACAGAGCTTCCTGAAGTTGTTGATTGCTCAGCTAGAACGGGATTGGACACACTTGAAAAACACTATGCTGAAGCCATTGACTTCGAGATTGTTTTCTTTTTGCCTGATAGCGAAGAGGATTTTGCTTCGTACACTGAATTCCTACGCTACCTTGGTGCAAAATATCGTGCCGGCGTGGCCAAGTTTATTGACGGTACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCACCGGACCTGAACGTCTATATGGCGTTGTTCTCAAGTTTGCACCAGTACCAAGTGGTGCGCCTGTGCACCAACCACCGCATTTGCCTGCACCGTCAAATCAATATATGCAACAGAGGCCTCCTTCACAGGCTGAATATGATAGGAATCCTGCAAAGGAGGAACAAGTTTTGCCAATGGATTACAACAGAATGTTGCATGAGGATTCTAAGCTTCCTGCTAAACAAGTATATCCGCCTACAGGTGGGCCTCCTTCAGTTCAGTCTGCAACTCCGGATTATGCTTCAAACACTGCTGCTTCTGGGTCTCAAGCTGGAGTTGCACTGACACCCGAGCTTATTGCGACTTTAGCTTCTTTTCTTCCTACGAATGCACAATCATCTGCTACTGATGGTGCCATGTCAGCTGTAGGCTCCTCAACTGCGAAGCCTCCATTTCCTCATGTGGCACCCAATGATGGGAACCAATCTCAGTTATGGAAACAGGATCATCAAACTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCACAATGCTCATTTTCAGCCTTATCCGCCAGCATCAGGTCCTGGTCACACAGCTCAAGTCTTCTCTGGCAGTTCTCATATTCATGACAATGCTGTTAGCCAGCAACAGCAAGGAGCTGTTTCATCCAGACACATGTCTAATTTTGTGACACCTACTCAAAGTGGACCGGTAGCTGCATCCCCCCATTTCAGTCACCAGTATCAGGCTGAAGTTCCCCCCAATACTCAGAAAGGCTATGGTGTGGTGCCGGGAAGTGATGCCTCTGTTTTATACAACTCTCAGGCTTTTCAGCAACCGAATAGTAACCCCCAGCTTTTCCAGCAACCCAATAATTCTATTAGTCAAGTTAACAGTGCTAATCCTCAGCATCAACCTGCCATGCAATATACTGCAGACCAAATAAACTCAAACCCTCACATTCAGCAGCATCCTGCCGTTGGAGTTGCTCAAGCCACCCCAGAATTAGAGGCCGATAAGAACCAGAGATACCAGACAACATTACAATTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAGCAGCAGCAGCAAACACAAGGAGGACATCAACAATGA 2901 0.4516 MPLPTKPTRPLHETGRDSEESSTPSNNLWVGNLTPDVRDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRIEDAKAAKNALQGFSFRGNSLKIEFARPARPCKQLWVGGISPAVTKEDLEADFRKFGKIEDYKFIRDRNTACVEFFNLDNAIQAMKSMNGKRIGGENIRVDFLRSNSTKKDQLLDYGQFQGKSGPTDSYSGQKRPLNSQPQMGRKGDGQPSNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITINFSNGDQAHGKDYSGFYPGSNGPRPDLFLNEHSYRPLQMDLFGHNCPMVPNNFPGHLPTGGIVGPNIQMRPFGPQSGPESVVSGPEFNENSTLHKFQDGSSANKMGSNWKRPSPPAPGLLSSPVPGARLPARSTSGAWDVLDVNHNPRDSKRSRIDGALPNDDPYGGRGILGPASMRNTGGVHSSVQPGGLDHIWRGLIAKGGTPVCRARCVPVGKGIGTELPEVVDCSARTGLDTLEKHYAEAIDFEIVFFLPDSEEDFASYTEFLRYLGAKYRAGVAKFIDGTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFAPVPSGAPVHQPPHLPAPSNQYMQQRPPSQAEYDRNPAKEEQVLPMDYNRMLHEDSKLPAKQVYPPTGGPPSVQSATPDYASNTAASGSQAGVALTPELIATLASFLPTNAQSSATDGAMSAVGSSTAKPPFPHVAPNDGNQSQLWKQDHQTADQSIHPPQQFRNMYNSHNAHFQPYPPASGPGHTAQVFSGSSHIHDNAVSQQQQGAVSSRHMSNFVTPTQSGPVAASPHFSHQYQAEVPPNTQKGYGVVPGSDASVLYNSQAFQQPNSNPQLFQQPNNSISQVNSANPQHQPAMQYTADQINSNPHIQQHPAVGVAQATPELEADKNQRYQTTLQFAANLLLQIQQQQQQQQTQGGHQQ 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03068 966 Gene3D - 208 302 IPR012677 -
Trre8g03068 966 Gene3D - 101 182 IPR012677 -
Trre8g03068 966 Gene3D - 10 100 IPR012677 -
Trre8g03068 966 CDD RRM_SF 105 171 - -
Trre8g03068 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Trre8g03068 966 MobiDBLite consensus disorder prediction 719 748 - -
Trre8g03068 966 CDD RRM_SF 28 94 - -
Trre8g03068 966 Pfam SPOC domain 481 596 IPR012921 -
Trre8g03068 966 MobiDBLite consensus disorder prediction 665 690 - -
Trre8g03068 966 SMART rrm1_1 223 291 IPR000504 GO:0003723
Trre8g03068 966 SMART rrm1_1 27 94 IPR000504 GO:0003723
Trre8g03068 966 SMART rrm1_1 104 171 IPR000504 GO:0003723
Trre8g03068 966 MobiDBLite consensus disorder prediction 622 636 - -
Trre8g03068 966 MobiDBLite consensus disorder prediction 387 475 - -
Trre8g03068 966 FunFam Flowering time control protein FPA isoform A 101 214 - -
Trre8g03068 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 23 96 - -
Trre8g03068 966 FunFam Flowering time control protein FPA 18 100 - -
Trre8g03068 966 SUPERFAMILY RNA-binding domain, RBD 199 303 IPR035979 GO:0003676
Trre8g03068 966 MobiDBLite consensus disorder prediction 613 640 - -
Trre8g03068 966 MobiDBLite consensus disorder prediction 190 216 - -
Trre8g03068 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Trre8g03068 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 288 IPR000504 GO:0003723
Trre8g03068 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Trre8g03068 966 SUPERFAMILY RNA-binding domain, RBD 100 200 IPR035979 GO:0003676
Trre8g03068 966 MobiDBLite consensus disorder prediction 190 220 - -
Trre8g03068 966 SUPERFAMILY RNA-binding domain, RBD 14 100 IPR035979 GO:0003676
Trre8g03068 966 CDD RRM_SF 229 291 - -
Trre8g03068 966 MobiDBLite consensus disorder prediction 673 690 - -
Trre8g03068 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Trre8g03068 966 MobiDBLite consensus disorder prediction 434 448 - -
Trre8g03068 966 MobiDBLite consensus disorder prediction 1 30 - -
Trre8g03068 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03068 Trre-Chr8 27377369 27384150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03068 25 285 Eukaryotic Initiation Factors Gene Family AT4G34110 22.028 1.75e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03068 - - mtr:11412967 1593.94