Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03056 ATGCCTAAGCAAATTAATGAGATTAAAGACTTCCTCCTCACAGCGAGGAGGAAGGATGCACGCTCCGTGAAAATCAAGAGAAGCAAAGATGTCGTCAAGTTCAAGGTTCGTTGCTCCAAGTATCTCTACACACTTTGTGTGTTTGATACCGAGAAAGCTGATAAGTTGAAGCAATCACTTCCTCCAGGTTTGAATGTGCAAGACTTGTAA 210 0.4238 MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLNVQDL 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03056 69 FunFam 60S ribosomal protein L38 1 69 - -
Trre8g03056 69 PANTHER 60S RIBOSOMAL PROTEIN L38 1 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Trre8g03056 69 Gene3D - 1 69 IPR038464 -
Trre8g03056 69 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03056 Trre-Chr8 27282766 27283629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03056 1 69 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 92.754 4.05e-43 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03056 K02923 - thj:104805270 135.576