Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03052 ATGAACATGGAAGATCAATTTTCCTTAAAGGACAATGGAATTAGCTTTTGGACACCATTGGATAATGGAATGAAAAGTTCAACAACTCCAGATGACATGTTTAACAACATCTCCGAGCTTATGAACTTCGATAACTATGCCGGTTGGTGCAACAGTTCATCATCATTAACTGATCAAACACTAACTAGTGACCTTTCATCATTTGCATATTCACCACATGATGGATTGAATTTAGTTGAACAAATTAATGGTCCATATTTTATGACAGAAATTGGTGGAAATTATAGCTCCACTAGTTATGAGGAAAAAGTACTATTACAACAAATGGAAACACAATTTGGTTTCTTAGATAATGCAAATGAAACAAATAATAATAATAATAATAATAATTTAGAATCACAACATGAACAAAATGGCTCATTTGATATGTGCAATTACATAATGTCGAAATCGCCTAGTTGGTCACTTGATGAAAGAATGATGAGTGCTTTGTCCTTCTTTAAAGAATCAGCTGGTGGAGGAATATTAGCACAAGTTTGGGTACCAATAAAGTATGGTGATGAAATTGTCTTAACTACAAGTAATCAACCTTATTTACTAGACCAAAAGCTTGCAGGTTATCGAGAAGTGTCGAGGTCGTTTACATTTTCTGCAGAAATGAAAATGGGAGCTTGTTGTCCTGGACTTCCGGGCCGCGTGTTTATTTCGCATGTTCCTGAATGGACATCTAATGTTGGTTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCAATTAGTCACGAGGTTCGCGGATCGATTGCTCTTCCAATATCTGATATGCACTCTGAAGTTTCATGTAGTGCTGTGCTAGAACTTGTTACTACAAAGGAAAAGCCTAATTTTGATAAAGAATTAGAATATGTTTCTCATGCACTTCAGCGTATGAATTTAAGGACTATTACCCCTCCGCGACTTCTTCCGCAGTGTGTATCAAATAACAAAAGAGCTGCATTAACAGAGATAGTTGATGTGTTAAGAGCTGTTTGCCATGCGCATAGATTGCCACTAGCACTGACATGGATTCCATGTTATTATAGTGAAGGAAAAGGCGAAGAATCTGAGAGATTACGGATTAAAGAAGGCCATAAAACAAATTCTGATGAAAAATGTGTGCTGTGTATTGAAGAATCGGCTTGTTATATCAACGATAAAATGGTAGAAGGATTTGTTCATGCATGTTCTGAACATCACCTTGAGGAAGGACAAGGTATATCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAAGCTTATGATATTAGTGAATATCCGCTTGTTCATCATGCGCGAAAATATAACTTGAATGCTGCAGTTGCAACTAGGTTAAGGAGTACTTATACTAATGATGATGATTATGTGTTAGAATTCTTTCTACCTATCAATATGATAGGGAGTTCGGAACAACAGCTTTTATTAGACAATTTGTCTGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGGTGAATTGAGAGGGATAGACGGTTCTCAAGATGGTTTTCTAAAGGAAAATATCTCAGGGTTTTTTCCGATGTCTAAGGGGAACTCTCAGATAGCATTTAGCACTGGTGATCCTGATTTATTCCAGATGCCACTGATGACAGCTAACCTAAAAAATAATGGAATCCAAGCTTCACATAGTCAGGTAACAAGTGAATCAAGAAAGCAGGCTGAGAAAAGAAGAAATGCAGTTGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTTTGAAGGATGCTGCAAAAAAAATTGGGGTTTGTCCAACAACTCTGAAGAGAATATGCAGGCAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCGTTGAAGAAAATACAAACTGTCCTTGATTCTGTGCAAGGAGTTGAAGGTGTTCTGAAGTTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGGTCAATCATTGAGCAAATTGGTACACATAATAAAAATCTCATGTTTCCCGAGAAAAGTTCTGTAGAGAACGCGGCTATTAAGTTGGAGGATGACGGTGTTCTTATCTCTAATTCATGTGAGGGTGACTTGAAAAAAGATAATAATGCTTCTTCTGTTGACTATATTCAAGATTCAACATCATGGCTTTGGACAAAGACTCATGAATGTCCTAAACAAAACTCTATGGATTCTGTTCTTGAAAAAGAGGAAGATCAATGTGGTTTGAACAATGGTAGTTTGCATGATATTGCCTCTAATAGTTCTTTCTCATTGATAGAACTTGGTTTGGATGAAGGAAAAGGAGTTGATGAACCTAACCATCCTACTTCTTCAAGCATGACAGATTCTTCCAATGCATCCGGATCAATGGTTCGTGGAAGTTCATCAGGCTCTCAAAGCATTGAGAACCAGAAGAACTCAAAGGTCAAATCAATTTGTGTTGATAGTGAGTCGAAATTTGCCATCAAAGCTACTTTTAGAGGCGATACTATTCGTTTCAAGTTTGATCCATGCTTAGGCTGTTTCCAACTATATGAAGAAGTTGCAACAAGGTTCAAATTACGGAATGGTTCGTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAAGTTTTGAGTGATAGTGGTACACATTGTGTGAGGTTACTTGTTCGCGATTTACATGGCGACAATAATAGTTGA 2781 0.3718 MNMEDQFSLKDNGISFWTPLDNGMKSSTTPDDMFNNISELMNFDNYAGWCNSSSSLTDQTLTSDLSSFAYSPHDGLNLVEQINGPYFMTEIGGNYSSTSYEEKVLLQQMETQFGFLDNANETNNNNNNNNLESQHEQNGSFDMCNYIMSKSPSWSLDERMMSALSFFKESAGGGILAQVWVPIKYGDEIVLTTSNQPYLLDQKLAGYREVSRSFTFSAEMKMGACCPGLPGRVFISHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMHSEVSCSAVLELVTTKEKPNFDKELEYVSHALQRMNLRTITPPRLLPQCVSNNKRAALTEIVDVLRAVCHAHRLPLALTWIPCYYSEGKGEESERLRIKEGHKTNSDEKCVLCIEESACYINDKMVEGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVATRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEGELRGIDGSQDGFLKENISGFFPMSKGNSQIAFSTGDPDLFQMPLMTANLKNNGIQASHSQVTSESRKQAEKRRNAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIEQIGTHNKNLMFPEKSSVENAAIKLEDDGVLISNSCEGDLKKDNNASSVDYIQDSTSWLWTKTHECPKQNSMDSVLEKEEDQCGLNNGSLHDIASNSSFSLIELGLDEGKGVDEPNHPTSSSMTDSSNASGSMVRGSSSGSQSIENQKNSKVKSICVDSESKFAIKATFRGDTIRFKFDPCLGCFQLYEEVATRFKLRNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDSGTHCVRLLVRDLHGDNNS 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03052 926 Gene3D - 834 918 - -
Trre8g03052 926 MobiDBLite consensus disorder prediction 791 822 - -
Trre8g03052 926 ProSiteProfiles RWP-RK domain profile. 578 659 IPR003035 -
Trre8g03052 926 MobiDBLite consensus disorder prediction 784 822 - -
Trre8g03052 926 SMART PB1_new 838 920 IPR000270 GO:0005515
Trre8g03052 926 MobiDBLite consensus disorder prediction 565 585 - -
Trre8g03052 926 SUPERFAMILY CAD & PB1 domains 834 922 - -
Trre8g03052 926 Pfam PB1 domain 839 919 IPR000270 GO:0005515
Trre8g03052 926 ProSiteProfiles PB1 domain profile. 838 920 IPR000270 GO:0005515
Trre8g03052 926 Pfam RWP-RK domain 591 639 IPR003035 -
Trre8g03052 926 PANTHER PROTEIN NLP8 100 920 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03052 Trre-Chr8 27184391 27188154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03052 3 920 NLP Transcription Factor Family AT2G43500 47.678 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre8g03052 PB1 1.2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03052 - - aprc:113864503 1192.56