Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03049 ATGGTAACAAGTTTCTTGAAAGAAAACGTAAGGAATATGAAGAAGAAGAAGATCTTCGTCAAAACATTGATCGGAAAGACTATCACTCTCGAGGTTGAGACCAGCGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAGCAGCAGAGGCTCATATATGCTGGTAAGCAGCTTGCTGATGATAAAACAGCTAAAGAGTACAACATTGAGGGTGGTTCGGTGCTTCACTTGGTGCTTGCATTGAGGGGTGGTAATTAA 282 0.4433 MVTSFLKENVRNMKKKKIFVKTLIGKTITLEVETSDTIDNVKAKIQDKEGIPPDQQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGN 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03049 93 Gene3D - 8 93 - -
Trre8g03049 93 PRINTS Ubiquitin signature 26 46 IPR019956 -
Trre8g03049 93 PRINTS Ubiquitin signature 69 90 IPR019956 -
Trre8g03049 93 PANTHER UBIQUITIN 17 92 - -
Trre8g03049 93 ProSiteProfiles Ubiquitin domain profile. 16 92 IPR000626 GO:0005515
Trre8g03049 93 FunFam Polyubiquitin-C 16 92 - -
Trre8g03049 93 SUPERFAMILY Ubiquitin-like 14 92 IPR029071 -
Trre8g03049 93 SMART ubq_7 16 88 IPR000626 GO:0005515
Trre8g03049 93 Pfam Ubiquitin family 18 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03049 Trre-Chr8 27038992 27041286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03049 17 92 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 78.947 4.72e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03049 - K08770 gab:108459246 119.783