Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03021 ATGGATCATGATCAACAACAATACAAGCCATCCTTCTTTGCTATCATCAAAGAAGGCTTCAACACCAACTGCATGAAAATCCCGAAGAAGATTGTTATGAATTTGGGTGAAGAGTTGTGGAAAAATGCTTTGATTTTTCTGACAGGCTCTTCTGGTGAGAAGTGGCAAGTGAGTATTTTGAAGAAAGAAAATGCAATATATCTGCAAAATATTGGTTGGCAAAATTTTCTGAAAGACAACTCTGTGTTGCATGAAGAGCTCTTGCTTTTCACATATAAGGCAGAGAACAGGTTCCAGGTTCAAATTTTTGGTAAGAATGGATTAGAGAGACCATGCTTCCAGAAAGAACAAGAAGTTGCAGTCCCAATTGTACCGGAGACAATGACGGGTAGCCAACAAAAAACCCCTGCTCGTGATAGCGTATGCGTCAAGGAAGAAAACGAAGAAGCTGTAGCAACAGTGGTGGTTAAGAGAAAGAGGGGTAGACCAAGGAAAAATCCTCCTCCTGAGAGATGCGTCAAGCAAAAGGAAGCAGAAGCTGAAGCTGCAGTAACAATGGTGGCCAAAGGAATGGAGAATAGACCAAGAACAAATGCTTCTCCTGAGAGAGTATGTGTGAAGAAAAAAGATGCAGAAGCTGCGGCAAAAACAGTGGCCAAAGGAATGAAGGATAGCCCAAGAAAAAGTGGTTCTCCGGAGAGAGTACGTGTATGTGTCGCGAAGAAAGAAGCGGAAGCTGCAACACCAACAATGGTGACCAAAGGAATGATGTATAGACCAATAAATGCTTCTCCTGAGAGAGTATTTGTTCCGAAAAAAGCAGAATCTGCAACTGCAACAATTGTGGCCAAAGGAATGAATGATAGACCAAGATATGTTTCTCCTGAGAGAGTGTTCGACATGAAAAAAGCAGAATCTGCAACAGCTACAATGGTGGCTAAAGGAATGAAGGATAGACCAAGATATGTTTCTCCTGAGAGAGTATTTGTCATGAAAAAAGAAACAGAAGCTGCAGCAACAATGGTGGCTAAAGGAATAAAGGATAGACCAAGAAACAATGCTTCCCCTCAAAGAGAGTGCCTCAAGAAAACAGAAGCAGTAGCTGCAGCAACAATGGTGGCTAAAGGAATGAAGGATAGGCCACCAAGTTATGCTTCTCCTGAGAGAGTATTTGTCATGAAAACAGAAGCAGAAGCTGCAGCAACAATGGTTGTCAAAGGAATGAAGGGTAGACCAAGAAGAAATTCTGCTCCTGCTGTTATTGTAATAGACTGA 1275 0.4188 MDHDQQQYKPSFFAIIKEGFNTNCMKIPKKIVMNLGEELWKNALIFLTGSSGEKWQVSILKKENAIYLQNIGWQNFLKDNSVLHEELLLFTYKAENRFQVQIFGKNGLERPCFQKEQEVAVPIVPETMTGSQQKTPARDSVCVKEENEEAVATVVVKRKRGRPRKNPPPERCVKQKEAEAEAAVTMVAKGMENRPRTNASPERVCVKKKDAEAAAKTVAKGMKDSPRKSGSPERVRVCVAKKEAEAATPTMVTKGMMYRPINASPERVFVPKKAESATATIVAKGMNDRPRYVSPERVFDMKKAESATATMVAKGMKDRPRYVSPERVFVMKKETEAAATMVAKGIKDRPRNNASPQRECLKKTEAVAAATMVAKGMKDRPPSYASPERVFVMKTEAEAAATMVVKGMKGRPRRNSAPAVIVID 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03021 424 SUPERFAMILY DNA-binding pseudobarrel domain 9 107 IPR015300 -
Trre8g03021 424 MobiDBLite consensus disorder prediction 158 178 - -
Trre8g03021 424 ProSiteProfiles B3 DNA-binding domain profile. 10 106 IPR003340 GO:0003677
Trre8g03021 424 Pfam B3 DNA binding domain 19 105 IPR003340 GO:0003677
Trre8g03021 424 PANTHER B3 DOMAIN-CONTAINING 6 239 - -
Trre8g03021 424 Gene3D - 4 107 IPR015300 -
Trre8g03021 424 CDD B3_DNA 10 103 IPR003340 GO:0003677
Trre8g03021 424 SMART B3_2 12 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03021 Trre-Chr8 26807583 26809394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03021 10 105 REM Transcription Factor Family AT3G06220 31.250 4.98e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g03021 B3 1.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03021 - - tpra:123919002 571.622