Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g03020 ATGTGCTCTATCTCTTTTTGCTTTGAACCTGCAAATCTCAAGTTTCAGCTTTTCAAGATGGATCATGATCAACAACAATACAAGCCATCCTTCTTTGCTATCATCAAAGAAGGCTTCAACACCAACTGCATGAAAATCCCGAAGAAGATTGTTATGAATTTGGGTGAAGAGTTGTGGAAAAATGCTTTGATTTTTCTGACAGGCTCTTCTGGTGAGAAGTGGCAAGTGAGTATTTTGAAGAAAGAAAATGCAATATATCTGCAAAATATTGGTTGGCAAAATTTTCTGAAAGACAACTCTGTGTTGCATGAAGAGCTCTTGCTTTTCACATATAAGGCAGAGAACAGGTTCCAGGTTCAAATTTTTGGTAAGAATGGATTAGAGAGACCATGCTTCCAGAAAGAACAAGAAGTTGCAGTCCCAATTGTACCGGAGACAATGACGGGTAGCCAACAAAAAACCCCTGCTCGTGATAGCGTATGCGTCAAGGAAGAAAACGAAGAAGCTGTAGCAACAGTGGTGGTTAAGAGAAAGAGGGGTAGACCAAGGAAAAATCCTCCTCCTGAGAGATGCGTCAAGCAAAAGGAAGCAGAAGCTGAAGCTGCAGTAACAATGGTGGCCAAAGGAATGGAGAATAGACCAAGAACAAATGCTTCTCCTGAGAGAGTATGTGTGAAGAAAAAAGATGCAGAAGCTGCGGCAAAAACAGTGGCCAAAGGAATGAAGGATAGCCCAAGAAAAAGTGGTTCTCCGGAGAGAGTACGTGTATGTGTCGCGAAGAAAGAAGCGGAAGCTGCAACACCAACAATGGTGACCAAAGGAATGATGTATAGACCAATAAATGCTTCTCCTGAGAGAGTATTTGTTCCGAAAAAAGCAGAATCTGCAACTGCAACAATTGTGGCCAAAGGAATGAATGATAGACCAAGATATGTTTCTCCTGAGAGAGTGTTCGACATGAAAAAAGCAGAATCTGCAACAGCTACAATGGTGGCTAAAGGAATGAAGGATAGACCAAGATATGTTTCTCCTGAGAGAGTATTTGTCATGAAAAAAGAAACAGAAGCTGCAGCAACAATGGTGGCTAAAGGAATAAAGGATAGACCAAGAAACAATGCTTCCCCTCAAAGAGAGTGCCTCAAGAAAACAGAAGCAGTAGCTGCAGCAACAATGGTGGCTAAAGGAATGAAGGATAGGCCACCAAGTTATGCTTCTCCTGAGAGAGTATTTGTCATGAAAACAGAAGCAGAAGCTGCAGCAACAATGGTTGTCAAAGGAATGAAGGGTAGACCAAGAAGAAATTCTGCTCCTGCTGTTATTGTAATAGACTGA 1332 0.4167 MCSISFCFEPANLKFQLFKMDHDQQQYKPSFFAIIKEGFNTNCMKIPKKIVMNLGEELWKNALIFLTGSSGEKWQVSILKKENAIYLQNIGWQNFLKDNSVLHEELLLFTYKAENRFQVQIFGKNGLERPCFQKEQEVAVPIVPETMTGSQQKTPARDSVCVKEENEEAVATVVVKRKRGRPRKNPPPERCVKQKEAEAEAAVTMVAKGMENRPRTNASPERVCVKKKDAEAAAKTVAKGMKDSPRKSGSPERVRVCVAKKEAEAATPTMVTKGMMYRPINASPERVFVPKKAESATATIVAKGMNDRPRYVSPERVFDMKKAESATATMVAKGMKDRPRYVSPERVFVMKKETEAAATMVAKGIKDRPRNNASPQRECLKKTEAVAAATMVAKGMKDRPPSYASPERVFVMKTEAEAAATMVVKGMKGRPRRNSAPAVIVID 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g03020 443 Gene3D - 22 126 IPR015300 -
Trre8g03020 443 PANTHER B3 DOMAIN-CONTAINING 25 258 - -
Trre8g03020 443 Pfam B3 DNA binding domain 38 124 IPR003340 GO:0003677
Trre8g03020 443 ProSiteProfiles B3 DNA-binding domain profile. 29 125 IPR003340 GO:0003677
Trre8g03020 443 CDD B3_DNA 29 122 IPR003340 GO:0003677
Trre8g03020 443 MobiDBLite consensus disorder prediction 177 197 - -
Trre8g03020 443 SUPERFAMILY DNA-binding pseudobarrel domain 28 126 IPR015300 -
Trre8g03020 443 SMART B3_2 31 125 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g03020 Trre-Chr8 26807583 26809750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g03020 29 124 REM Transcription Factor Family AT3G06220 31.250 5.46e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g03020 B3 1.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g03020 - - tpra:123919002 571.622